PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G08010.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 951aa MW: 104904 Da PI: 6.2787

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G08010.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.6e-29	594	644	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OMERI11G08010.2 594 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 644 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	583	664	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-26	597	644	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.2E-24	844	939	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-24	850	932	No hit	No description
PROSITE profile	PS51745	26.274	853	935	IPR000270	PB1 domain
Pfam	PF00564	6.2E-19	853	934	IPR000270	PB1 domain
SMART	SM00666	1.4E-25	853	935	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 951 aa Download sequence Send to blast
MDGGGKPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQQRLLHV 60 STAAGSSSRQ DDANVSITEE GTTTRTRSDR AAGLASGEPV AAGIGSVPKP FDGVTLTERM 120 LRALAMLKEA SGGEAILVQV WMPVRNGEQH VLTTSDQPFL LDQKLRGYRE VSRQFTFSAE 180 EGPGLFPGMP GRVFMSGMPE WTSNVMYYHG SEYLRVDYAR RHEVRGSLAM PVFNSSGGSC 240 CAVLEVVMTR EKDNFCLEMV DVSNALQGNL DQFAYLDQLE VLGQSGRQAE FLVLYITHKH 300 KPPPIIQLPR TSWNLETGQS IQSQISPIES YSRDQKLALM EIFDVLQAVC QAHLLPLALA 360 WIPVCSKRDV LVSVEYGAKF GKRNKEVLCI EESACYVNDT RMRDFVQVCA EHPLEKGQGV 420 TGNAYLSNNP FFSSDVKDSD MHAYPLVNHA RKFGLHAAVA IRLRSTYTKN DDYVLEFFLP 480 VLCKGGEEQQ LLLDSISATM RKVCKSLRTV SDAELKEDVT RKPSNENRSG TRCPSPVNLI 540 YSGREIDVPN ETKTNTPLEY QIGSIDEQLA DTKSTNKLIK CSNASGEKRR SSSEKSVSLS 600 VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK IKKVNRSLKK IQNVISSVHG 660 VEGVLKYDPS TGCLISSVSP SIEPVLMNVE HKGSDPLPIE SELPHLNFEP DCDAYRREHA 720 GQDVLHKLQN KQNGEINFDM DDGELFRNSH STRTLSGAFC EDMSNGLYVA REMTCAAKTG 780 TRMERLEHKP SSRDSFSTPQ EYRTESETDK SNKNAKQSLP SSSSMTDCSS GGISSGETFK 840 SIKSQSANES NTTVVVKASY KNDTIRFKLL PSMKYEQLLE EIAKRLKLSV GVFQLKYKDD 900 EGDWVILASD ADLQECLEIL DTTRLHILKL QVQDVVCPIG SSSGSCSMLG P

Sequence ? help Back to Top

Protein Sequence Length: 951 aa Download sequence Send to blast

MDGGGKPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQQRLLHV  60
STAAGSSSRQ DDANVSITEE GTTTRTRSDR AAGLASGEPV AAGIGSVPKP FDGVTLTERM  120
LRALAMLKEA SGGEAILVQV WMPVRNGEQH VLTTSDQPFL LDQKLRGYRE VSRQFTFSAE  180
EGPGLFPGMP GRVFMSGMPE WTSNVMYYHG SEYLRVDYAR RHEVRGSLAM PVFNSSGGSC  240
CAVLEVVMTR EKDNFCLEMV DVSNALQGNL DQFAYLDQLE VLGQSGRQAE FLVLYITHKH  300
KPPPIIQLPR TSWNLETGQS IQSQISPIES YSRDQKLALM EIFDVLQAVC QAHLLPLALA  360
WIPVCSKRDV LVSVEYGAKF GKRNKEVLCI EESACYVNDT RMRDFVQVCA EHPLEKGQGV  420
TGNAYLSNNP FFSSDVKDSD MHAYPLVNHA RKFGLHAAVA IRLRSTYTKN DDYVLEFFLP  480
VLCKGGEEQQ LLLDSISATM RKVCKSLRTV SDAELKEDVT RKPSNENRSG TRCPSPVNLI  540
YSGREIDVPN ETKTNTPLEY QIGSIDEQLA DTKSTNKLIK CSNASGEKRR SSSEKSVSLS  600
VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK IKKVNRSLKK IQNVISSVHG  660
VEGVLKYDPS TGCLISSVSP SIEPVLMNVE HKGSDPLPIE SELPHLNFEP DCDAYRREHA  720
GQDVLHKLQN KQNGEINFDM DDGELFRNSH STRTLSGAFC EDMSNGLYVA REMTCAAKTG  780
TRMERLEHKP SSRDSFSTPQ EYRTESETDK SNKNAKQSLP SSSSMTDCSS GGISSGETFK  840
SIKSQSANES NTTVVVKASY KNDTIRFKLL PSMKYEQLLE EIAKRLKLSV GVFQLKYKDD  900
EGDWVILASD ADLQECLEIL DTTRLHILKL QVQDVVCPIG SSSGSCSMLG P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0F4I5	0.0	A0A0E0F4I5_9ORYZ; Uncharacterized protein
STRING	OGLUM11G08660.3	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein