PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G08010.7

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 936aa MW: 103184 Da PI: 6.5108

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G08010.7	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.6e-29	579	629	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OMERI11G08010.7 579 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 629 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	568	649	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-26	582	629	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.87E-24	829	924	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-24	835	917	No hit	No description
SMART	SM00666	1.4E-25	838	920	IPR000270	PB1 domain
Pfam	PF00564	6.1E-19	838	919	IPR000270	PB1 domain
PROSITE profile	PS51745	26.274	838	920	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence Send to blast
MDGGGKPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQQRLLHV 60 STAAGSSSRQ DDANVSITEE GTTTRTRSDR AAGLASGEPV AAGIGSVPKP FDGVTLTERM 120 LRALAMLKEA SGGEAILVQV WMPVRNGEQH VLTTSDQPFL LDQKLRGYRE VSRQFTFSAE 180 EGPGLFPGMP GRVFMSGMPE WTSNVMYYHG SEYLRVDYAR RHEVRGSLAM PVFNSSGGSC 240 CAVLEVVMTR EKDNFCLEMV DVSNALQGQS GRQAEFLVLY ITHKHKPPPI IQLPRTSWNL 300 ETGQSIQSQI SPIESYSRDQ KLALMEIFDV LQAVCQAHLL PLALAWIPVC SKRDVLVSVE 360 YGAKFGKRNK EVLCIEESAC YVNDTRMRDF VQVCAEHPLE KGQGVTGNAY LSNNPFFSSD 420 VKDSDMHAYP LVNHARKFGL HAAVAIRLRS TYTKNDDYVL EFFLPVLCKG GEEQQLLLDS 480 ISATMRKVCK SLRTVSDAEL KEDVTRKPSN ENRSGTRCPS PVNLIYSGRE IDVPNETKTN 540 TPLEYQIGSI DEQLADTKST NKLIKCSNAS GEKRRSSSEK SVSLSVLQQY FSGSLKDAAK 600 SIGVCPTTLK RICRQHGISR WPSRKIKKVN RSLKKIQNVI SSVHGVEGVL KYDPSTGCLI 660 SSVSPSIEPV LMNVEHKGSD PLPIESELPH LNFEPDCDAY RREHAGQDVL HKLQNKQNGE 720 INFDMDDGEL FRNSHSTRTL SGAFCEDMSN GLYVAREMTC AAKTGTRMER LEHKPSSRDS 780 FSTPQEYRTE SETDKSNKNA KQSLPSSSSM TDCSSGGISS GETFKSIKSQ SANESNTTVV 840 VKASYKNDTI RFKLLPSMKY EQLLEEIAKR LKLSVGVFQL KYKDDEGDWV ILASDADLQE 900 CLEILDTTRL HILKLQVQDV VCPIGSSSGS CSMLGP

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence Send to blast

MDGGGKPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQQRLLHV  60
STAAGSSSRQ DDANVSITEE GTTTRTRSDR AAGLASGEPV AAGIGSVPKP FDGVTLTERM  120
LRALAMLKEA SGGEAILVQV WMPVRNGEQH VLTTSDQPFL LDQKLRGYRE VSRQFTFSAE  180
EGPGLFPGMP GRVFMSGMPE WTSNVMYYHG SEYLRVDYAR RHEVRGSLAM PVFNSSGGSC  240
CAVLEVVMTR EKDNFCLEMV DVSNALQGQS GRQAEFLVLY ITHKHKPPPI IQLPRTSWNL  300
ETGQSIQSQI SPIESYSRDQ KLALMEIFDV LQAVCQAHLL PLALAWIPVC SKRDVLVSVE  360
YGAKFGKRNK EVLCIEESAC YVNDTRMRDF VQVCAEHPLE KGQGVTGNAY LSNNPFFSSD  420
VKDSDMHAYP LVNHARKFGL HAAVAIRLRS TYTKNDDYVL EFFLPVLCKG GEEQQLLLDS  480
ISATMRKVCK SLRTVSDAEL KEDVTRKPSN ENRSGTRCPS PVNLIYSGRE IDVPNETKTN  540
TPLEYQIGSI DEQLADTKST NKLIKCSNAS GEKRRSSSEK SVSLSVLQQY FSGSLKDAAK  600
SIGVCPTTLK RICRQHGISR WPSRKIKKVN RSLKKIQNVI SSVHGVEGVL KYDPSTGCLI  660
SSVSPSIEPV LMNVEHKGSD PLPIESELPH LNFEPDCDAY RREHAGQDVL HKLQNKQNGE  720
INFDMDDGEL FRNSHSTRTL SGAFCEDMSN GLYVAREMTC AAKTGTRMER LEHKPSSRDS  780
FSTPQEYRTE SETDKSNKNA KQSLPSSSSM TDCSSGGISS GETFKSIKSQ SANESNTTVV  840
VKASYKNDTI RFKLLPSMKY EQLLEEIAKR LKLSVGVFQL KYKDDEGDWV ILASDADLQE  900
CLEILDTTRL HILKLQVQDV VCPIGSSSGS CSMLGP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0F4J0	0.0	A0A0E0F4J0_9ORYZ; Uncharacterized protein
STRING	OMERI11G07870.4	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein