PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G08930.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 536aa    MW: 57961.9 Da    PI: 6.3293
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G08930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.7e-11121177155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OMERI11G08930.1 121 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 177
                      57*******************4444.2455535555.779999**************98 PP
2AP251.32.9e-16220271155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  OMERI11G08930.1 220 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 271
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-8121177IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-14121187IPR016177DNA-binding domain
CDDcd000181.89E-18121187No hitNo description
PROSITE profilePS5103217.122122185IPR001471AP2/ERF domain
SMARTSM003805.7E-23122191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-11122186IPR001471AP2/ERF domain
PRINTSPR003672.4E-6123134IPR001471AP2/ERF domain
PfamPF008473.7E-11220271IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18220281IPR016177DNA-binding domain
CDDcd000184.55E-24220281No hitNo description
PROSITE profilePS5103218.834221279IPR001471AP2/ERF domain
SMARTSM003806.0E-33221285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17221280IPR001471AP2/ERF domain
PRINTSPR003672.4E-6261281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAAGGGEETA APKLEDFLGM QVQQETAAAA AGHGRGGSSS VVGLSMIKNW LRSQPPPPPA  60
VVVGEDPMMA LAVSSPAVDA AAAGTSPDGM GTNAADGGGA AEAAAAQRMK AAMDTFGQRT  120
SIYRGVTKHR WTGRYEAHLW DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGTTT  180
TTNFPVSNYE KELDEMKHMN RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  240
VAGNKDLYLG TFGTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSIIE SSNLPIGTGT  300
TRRLKDSSDH TENVMDINVN TEPNNVVSSH FTNWVGNYGS QHYGYNGLSP ISMQPIPSQY  360
ANGQPRAWLK QEQDSSVVTA AQNLHNLHHF SSLGYTHNFF QQSDVPDVTG FVDAPLRSGD  420
SYSFRYDGTN GFHGLPGGIS YAMPVATAVD QGQGIHGYGE DGVAGIDTTH DLYGSRNVYY  480
LSEGSLVADV EKEGDYGQSV GGNSWVLPTP ESEMVEKADN VTVCHGMPLF SVWNNA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876210.0AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-124BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0E0F4W00.0A0A0E0F4W0_9ORYZ; Uncharacterized protein
STRINGOMERI11G08700.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-116AP2 family protein