PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G11000.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 438aa    MW: 47049.9 Da    PI: 7.4502
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G11000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.5e-12154178327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OMERI11G11000.1 154 QPECQYYLKTGTCKFGATCKFHHPR 178
                      799********************96 PP
2zf-CCCH24.54.9e-08200219322
                      S---SGGGGTS--TTTTT-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCk 22 
                      +++C +++rtG+Ck+G++C+
  OMERI11G11000.1 200 EKECAYYLRTGQCKFGSTCH 219
                      679****************8 PP
3zf-CCCH39.69e-13305330227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OMERI11G11000.1 305 DQPECQFYMKTGDCKFGAVCKFHHPK 330
                      689*********************96 PP
4zf-CCCH38.42e-12350376127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OMERI11G11000.1 350 PGEPICTFYSRYGICKFGPNCKFDHPM 376
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.244151179IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6151178IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10154178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6154180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5157179IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.657197225IPR000571Zinc finger, CCCH-type
SMARTSM003561.6197221IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5200219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511303331IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5303330IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5306331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4309330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178349377IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7349376IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9351376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4354374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAATIGP HVVDEGALCF GHSHNADMFY NVDTLSVKGG  60
RTELPPRVLE RHTDMGISFG AAREGLSAAA TAVAVAASVI GPHSSDEEAM WQMNLGEAME  120
AGPYPERIGE PDCSYYMRTG LCRMKGEYPQ RIGQPECQYY LKTGTCKFGA TCKFHHPREK  180
AAMATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCHS SYAQVIVPPG LVQVPGWNPY  240
AAQIGSSSSD DQQRTAGGAK YYTGSRHSET PNMGDQGMFS SYQAGSVPLG LYTVQRESIF  300
PERPDQPECQ FYMKTGDCKF GAVCKFHHPK ERIIPTPNCA LSSLGLPLRP GEPICTFYSR  360
YGICKFGPNC KFDHPMGTVM YGLPTSPTGD VSARRMLAPV PAHSEVSPDN VSGRSRRITH  420
SDSQQIPSGE RGTEREAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0F5M40.0A0A0E0F5M4_9ORYZ; Uncharacterized protein
STRINGORUFI11G13960.10.0(Oryza rufipogon)
STRINGONIVA11G12740.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-122zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]