PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G11000.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 515aa    MW: 55386.4 Da    PI: 8.2973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G11000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.5e-11130153326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C++++rtG C++G +CkF+H+
  OMERI11G11000.2 130 EPDCSYYMRTGLCRFGMTCKFNHP 153
                      789********************8 PP
2zf-CCCH38.61.8e-12175199327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OMERI11G11000.2 175 QPECQYYLKTGTCKFGATCKFHHPR 199
                      799********************96 PP
3zf-CCCH36.39.1e-12221245327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  OMERI11G11000.2 221 EKECAYYLRTGQCKFGSTCKFHHPQ 245
                      679********************97 PP
4zf-CCCH39.31.1e-12382407227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OMERI11G11000.2 382 DQPECQFYMKTGDCKFGAVCKFHHPK 407
                      689*********************96 PP
5zf-CCCH38.22.5e-12427453127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OMERI11G11000.2 427 PGEPICTFYSRYGICKFGPNCKFDHPM 453
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4127154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868127155IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8130153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5132155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4133154IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244172200IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10175199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6175201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5178200IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5218245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6218246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619218246IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9221245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4224244IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5380407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511380408IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9382407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5383408IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4386407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6425452IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7426453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178426454IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9428453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4431451IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAATIGP HVVDEGALCF GHSHNADMFY NVDTLSVKGG  60
RTELPPRVLE RHTDMGISFG AAREGLSAAA TAVAVAASVI GPHSSDEEAM WQMNLGEAME  120
AGPYPERIGE PDCSYYMRTG LCRFGMTCKF NHPADRKMAV AAARMKGEYP QRIGQPECQY  180
YLKTGTCKFG ATCKFHHPRE KAAMATRVQL NALGYPLRPN EKECAYYLRT GQCKFGSTCK  240
FHHPQPSNTM VAVRGSVYSP GQSVTSPSQH TYPGAVTNWP LSRSASFIAS PRWPGHSSYA  300
QVIVPPGLVQ VPGWNPYAAQ IGSSSSDDQQ RTAGGAKYYT GSRHSETPNM GDQGMFSSYQ  360
AGSVPLGLYT VQRESIFPER PDQPECQFYM KTGDCKFGAV CKFHHPKERI IPTPNCALSS  420
LGLPLRPGEP ICTFYSRYGI CKFGPNCKFD HPMGTVMYGL PTSPTGDVSA RRMLAPVPAH  480
SEVSPDNVSG RSRRITHSDS QQIPSGERGT EREAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0F5M50.0A0A0E0F5M5_9ORYZ; Uncharacterized protein
STRINGORUFI11G13960.10.0(Oryza rufipogon)
STRINGONIVA11G12740.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-156zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]