PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G11000.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 460aa    MW: 49714 Da    PI: 8.466
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G11000.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.3e-117598326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  OMERI11G11000.3 75 EPDCSYYMRTGLCRFGMTCKFNHP 98
                     789********************8 PP
2zf-CCCH38.81.6e-12120144327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OMERI11G11000.3 120 QPECQYYLKTGTCKFGATCKFHHPR 144
                      799********************96 PP
3zf-CCCH36.57.9e-12166190327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  OMERI11G11000.3 166 EKECAYYLRTGQCKFGSTCKFHHPQ 190
                      679********************97 PP
4zf-CCCH39.59.5e-13327352227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OMERI11G11000.3 327 DQPECQFYMKTGDCKFGAVCKFHHPK 352
                      689*********************96 PP
5zf-CCCH38.32.1e-12372398127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OMERI11G11000.3 372 PGEPICTFYSRYGICKFGPNCKFDHPM 398
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-47299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.86872100IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-87598IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-577100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-47899IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244117145IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6117144IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10120144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5123145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619163191IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5163190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6163191IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9166190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4169189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511325353IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5325352IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9327352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5328353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4331352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6370397IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7371398IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178371399IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9373398IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4376396IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAATIGP HVVDEGALCF GHSHNADMFY NVDTLSVMNL  60
GEAMEAGPYP ERIGEPDCSY YMRTGLCRFG MTCKFNHPAD RKMAVAAARM KGEYPQRIGQ  120
PECQYYLKTG TCKFGATCKF HHPREKAAMA TRVQLNALGY PLRPNEKECA YYLRTGQCKF  180
GSTCKFHHPQ PSNTMVAVRG SVYSPGQSVT SPSQHTYPGA VTNWPLSRSA SFIASPRWPG  240
HSSYAQVIVP PGLVQVPGWN PYAAQIGSSS SDDQQRTAGG AKYYTGSRHS ETPNMGDQGM  300
FSSYQAGSVP LGLYTVQRES IFPERPDQPE CQFYMKTGDC KFGAVCKFHH PKERIIPTPN  360
CALSSLGLPL RPGEPICTFY SRYGICKFGP NCKFDHPMGT VMYGLPTSPT GDVSARRMLA  420
PVPAHSEVSP DNVSGRSRRI THSDSQQIPS GERGTEREAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1103450.0AK110345.1 Oryza sativa Japonica Group cDNA clone:002-164-G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0F5M60.0A0A0E0F5M6_9ORYZ; Uncharacterized protein
STRINGOMERI11G10690.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-153zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]