PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G12080.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 77aa    MW: 9102.54 Da    PI: 10.8363
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G12080.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.13.4e-106623288
              NAM 32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
                     ++i+++di++++P d+  + ++++++ +fF++++kk++ ++r+n a+  g+W+   +
  OMERI11G12080.2  6 DFITDIDILHHNPLDIVPTRQEKKNRKHFFTRKEKKHHGDNRRNNAAGIGFWRLAST 62
                     679*************63445566788***********9*************95544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.945177IPR003441NAC domain
SuperFamilySSF1019416.8E-10263IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MPLPYDFITD IDILHHNPLD IVPTRQEKKN RKHFFTRKEK KHHGDNRRNN AAGIGFWRLA  60
STEALRVYKN PVIALIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361501e-63AC136150.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0023F12, complete sequence.
GenBankAP0149671e-63AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.18e-20PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA0A0E0F6194e-50A0A0E0F619_9ORYZ; Uncharacterized protein
STRINGORUFI11G15730.12e-31(Oryza rufipogon)
STRINGORGLA11G0125800.12e-32(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-08NAC domain containing protein 83