PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G18880.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 288aa    MW: 31704.6 Da    PI: 11.1487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G18880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.7e-201311833385
                      -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      ++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++ D++vF++ 
  OMERI11G18880.1 131 GVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRASDTIVFSRL 183
                      56899*********************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.8E-4115198IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-18128195IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-21129200IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-17130183IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561134198IPR003340B3 DNA binding domain
CDDcd100171.23E-15136182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSFILPFFL LPLSPFSLFS PPFLFPVRTP RRLQRPGAGV ATATAPPLAL SPSWQAIVQA  60
PPGAQHGRPR AAHVVVGARA TVREGRDAKR RRQAQPPGGA QAARGEALPA AADELQRLRH  120
RRRGHLQLCK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRASDTIVF  180
SRLAYGPDKL LFIDCKKNNT EAATGDEKPI TSGEAARVVR LFGMDIAAGG GDCWKRERAV  240
EMGQEAFLMK RQCVVHHRTP ALAACLLTRG KGIGSLREGI DDEIKIGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2810919620115DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048170.0AP004817.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0539D10.
GenBankAP0050020.0AP005002.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0486G03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624199.27e-92LOW QUALITY PROTEIN: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A0E0F8L80.0A0A0E0F8L8_9ORYZ; Uncharacterized protein
STRINGOS02T0764100-011e-131(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-30related to ABI3/VP1 1