PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G00340.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 534aa    MW: 58144.1 Da    PI: 7.1036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G00340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS216.71.2e-66120149260
             GRAS  49 Laarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
                      ++arl++s+ +ly+ l +ps++  + + +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp+
  OMERI12G00340.1   1 MSARLVSSCLGLYAPLpSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPR 94 
                      5799************55555555558899999************************************************************* PP

             GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                      +R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + va++  +l++e+L v ++Ea+aV++    h+l+d ++s ++    +L+l+++l 
  OMERI12G00340.1  95 VRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLA 177
                      ********....***************************.7************************99..999999999999....********* PP

             GRAS 236 PkvvvvveqeadhnsesFlerflea 260
                      Pkvv++veq+++h s+sFl+rf+ea
  OMERI12G00340.1 178 PKVVTMVEQDLSH-SGSFLARFVEA 201
                      *************.899******98 PP
2GRAS372.84.4e-11420352738374
             GRAS  38 mqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlq 130
                      +qR+aayf+eA++arl++s+ +ly+ l +ps++  + + +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++
  OMERI12G00340.1 203 TQRVAAYFAEAMSARLVSSCLGLYAPLpSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFH 296
                      8**************************55555555558899999************************************************** PP

             GRAS 131 aLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleser 224
                       LasRp+gpp++R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + va++  +l++e+L v ++Ea+aV++    h+l+d ++s ++  
  OMERI12G00340.1 297 ILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN-- 381
                      *******************....***************************.7************************99..999999999999.. PP

             GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                        +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wre+
  OMERI12G00340.1 382 --TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREK 471
                      ..**********************.899****************************************************999987.******* PP

             GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      l ++GF+  +l  +aa+qa lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  OMERI12G00340.1 472 LAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 527
                      *******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.7521131IPR005202Transcription factor GRAS
PfamPF035144.3E-641201IPR005202Transcription factor GRAS
PROSITE profilePS5098552.699128507IPR005202Transcription factor GRAS
PfamPF035141.5E-111203527IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSARLVSSCL GLYAPLPSPS PAGARVHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE  60
REERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMEALEAT GKRLSDFADT  120
LGLPFEFCPV ADKAGNLDPE KLGVTRREAV AVHWLRHSLY DVTGSDSNTL WLIQRLAPKV  180
VTMVEQDLSH SGSFLARFVE AXTQRVAAYF AEAMSARLVS SCLGLYAPLP SPSPAGARVH  240
GRVAAAFQVF NGISPFVKFS HFTANQAIQE AFEREERVHI IDLDIMQGLQ WPGLFHILAS  300
RPGGPPRVRL TGLGASMEAL EATGKRLSDF ADTLGLPFEF CPVADKAGNL DPEKLGVTRR  360
EAVAVHWLRH SLYDVTGSDS NTLWLIQRLA PKVVTMVEQD LSHSGSFLAR FVEAIHYYSA  420
LFDSLDASYS EDSPERHVVE QQLLSREIRN VLAVGGPART GDVKFGSWRE KLAQSGFRVS  480
SLAGSAAAQA ALLLGMFPSD GYTLIEENGA LKLGWKDLCL LTASAWRPIQ ASGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.0152856379Protein SCARECROW
5b3h_D0.0152856379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2431310.0AK243131.1 Oryza sativa Japonica Group cDNA, clone: J100030A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615402.10.0protein SCARECROW 1
SwissprotQ2RB590.0SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A0E0F9160.0A0A0E0F916_9ORYZ; Uncharacterized protein
STRINGOMERI12G00360.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-176GRAS family protein