PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G00770.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 215aa    MW: 24385.2 Da    PI: 6.2531
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G00770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.65.2e-19171432126
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyWka 85 
                      p G+ F P+ e+l+ +yL++ ++g+++e+  ++++e+d+y ++P +L +   +++++ k+wyf + ++ k  +g      r nr +   g+W++
  OMERI12G00770.1  17 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahrAYAHDGKSWYFLTVAKWKGGRGGvgtagRLNRcVEGGGTWHN 110
                      89************************87725569999**********8434444457789*****999998854444455****666699**** PP

              NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                      + + +++        g ++ + +   rap  +ktdW+m+e 
  OMERI12G00770.1 111 SQRRRAIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 143
                      ***999987.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-2214165IPR003441NAC domain
PROSITE profilePS5100521.97316165IPR003441NAC domain
PfamPF023656.2E-1117142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAEDDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPIEELRDIV READVYGSDP  60
ATLTEAHRAY AHDGKSWYFL TVAKWKGGRG GVGTAGRLNR CVEGGGTWHN SQRRRAIEGY  120
GDRQAFEYRA PGNKKTDWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKE ATPDEEERQE  180
TNVDLKGANI YQFQMAYMAS KDYFSVNPNH NNLLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.11e-71PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLA0A0E0F9761e-161A0A0E0F976_9ORYZ; Uncharacterized protein
STRINGOMERI12G00750.11e-134(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.17e-11vascular related NAC-domain protein 1