PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G00860.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 427aa    MW: 45569.7 Da    PI: 5.6532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G00860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.15.2e-1724736213128
              NAM  13 elvveyLkkkvegkkleleev.ikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                      +l+++yL + ++gk++e +e  i ++d+y +eP+dL  k    ++ ++   +fF++ ++++ ++++k+r++ +g+W  + + k v++k g +vg
  OMERI12G00860.1 247 DLITFYLPRLIAGKPTEDTEKfICRADVYGSEPSDLAgKfapVARCGKGGRFFFTSCKRHKGNNTKKERTAGAGTWVRQNS-KGVKNKAGVKVG 339
                      89*************6665555**************843555333466688**************************8866.889999****** PP

              NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                        + + f     ++g+ tdW+m+e + 
  OMERI12G00860.1 340 ETQNFRFK----KDGSYTDWLMEEHHC 362
                      *******7....78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078595.0E-2873246IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF534741.95E-2277246IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.9E-3479246IPR029058Alpha/Beta hydrolase fold
PROSITE profilePS5100516.914235382IPR003441NAC domain
PfamPF023652.6E-7247361IPR003441NAC domain
SuperFamilySSF1019416.54E-18247382IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MATLPQMAAA KEHQEAANPT TTTRTLVESV TNWIRVYSDG SVDRLGPPEA AAFMVLVPPY  60
DDPRDGLDVA GIVPVVLPLA PEHRLPAAID TGHAALLWLR DVACGASDTI VHPAVERLRG  120
AADFSRVFLI GDSAGGVLVH NVAARAGEAG AEALDPIRIA GGVLLHPGFI LPEKSPSELE  180
NPPTPLPVGT TSRDHPYTSP AAAVTAAEGA QLPPMLVMVA EEDMLLDAQV EYGEAMARAG  240
KAVETVDLIT FYLPRLIAGK PTEDTEKFIC RADVYGSEPS DLAGKFAPVA RCGKGGRFFF  300
TSCKRHKGNN TKKERTAGAG TWVRQNSKGV KNKAGVKVGE TQNFRFKKDG SYTDWLMEEH  360
HCCRQQAVAG DEEPVICRMY VSPRAPPDSA ARQESAAFVQ QQPAPQVSEP PCDKKRDAVA  420
EEAPAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2zsh_A5e-1666253143330Probable gibberellin receptor GID1L1
2zsi_A5e-1666253143330Probable gibberellin receptor GID1L1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005040.0BX000504.2 Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0F9850.0A0A0E0F985_9ORYZ; Uncharacterized protein
STRINGOMERI12G00860.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799