PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G02040.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 509aa    MW: 55913 Da    PI: 4.2057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G02040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.28.6e-431714903298
             GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                      +lLl+ A av++gd+  a+a+++rl +l a  +g+       p+  la yf+++L+ r+++      +a p+s+ ++     +  a+++++e++
  OMERI12G02040.1 171 DLLLAGAMAVDAGDAVHASAIMSRLDDLlADIAGRrsceatsPVDHLAYYFARGLKLRISG------AATPASSPPPPAANWSSPAYRMLQELT 258
                      689999*******************998766666456666679******************......3344444444445667789******** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa....sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                      P++kf+h+taNqaIlea++ +  vH++Df++ +G+QW +L+  La     R+++pp + +T v   +   + ++   ++ L++fAe+l++pf++
  OMERI12G02040.1 259 PFVKFAHFTANQAILEATADDLDVHVVDFNVAEGVQWSSLMSDLAaagrHRSSKPPLFHLTDVIT-SGAGTPRTADARRWLSEFAESLHLPFRY 351
                      ********************************************9664447799*******9999.4458999999999*************** PP

             GRAS 179 nvlvakrledl..eleeLrvkp....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh.nse..........sFl 254
                      + l++++ +d     +eL++         ++  +     ++   +++l+s  +  +L ++  l+Pk+v+++e e+++ +++          +F 
  OMERI12G02040.1 352 TSLHVHDGDDDdeLHHELAMICngssSPPVILTCDD--TTTTT-NTPLRSrLKLLLLGTITILQPKLVILIEDELSRiSKNppspslaappPFP 442
                      ***777555542222334332234323334444443..33332.3344441467889*****************999554489*********** PP

             GRAS 255 erflealeyysalfdsleaklpres....eerikvErellgreivnvv 298
                      e f++a+ +++a+++s+++ l + +       + v +e++g++++++v
  OMERI12G02040.1 443 EFFSDAVAHFTAVMESTASCLVSYDdeawLSLRRVGEEVVGPRVEDAV 490
                      *****************7766554423342233444555777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.277143509IPR005202Transcription factor GRAS
PfamPF035143.0E-40171490IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
METMPYPCSP LIPFSTQFEE ISSSSLLLWS PQAEDNPHEN AIMYEFDGDY IHQDHEFLDM  60
MVIQESANEF DGDHSHDQIH QDHEFLETMV IQESANEFDG DHSHDQIHQD HEFLEMMAIQ  120
ESANDLLQLQ DDFSVPNADP LAASFEFDER LAVAGHENGN VVAAQEESAG DLLLAGAMAV  180
DAGDAVHASA IMSRLDDLLA DIAGRRSCEA TSPVDHLAYY FARGLKLRIS GAATPASSPP  240
PPAANWSSPA YRMLQELTPF VKFAHFTANQ AILEATADDL DVHVVDFNVA EGVQWSSLMS  300
DLAAAGRHRS SKPPLFHLTD VITSGAGTPR TADARRWLSE FAESLHLPFR YTSLHVHDGD  360
DDDELHHELA MICNGSSSPP VILTCDDTTT TTNTPLRSRL KLLLLGTITI LQPKLVILIE  420
DELSRISKNP PSPSLAAPPP FPEFFSDAVA HFTAVMESTA SCLVSYDDEA WLSLRRVGEE  480
VVGPRVEDAV GRYEVTGRWG PDDGRAQGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1620049124297GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0F9Q50.0A0A0E0F9Q5_9ORYZ; Uncharacterized protein
STRINGOMERI12G02020.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171141111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-16GRAS family protein