PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G02100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 921aa    MW: 102164 Da    PI: 8.3873
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G02100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.32.8e-2592187185
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d
  OMERI12G02100.1  92 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 185
                      7*********************9877778889999**********************************************5499999999988 PP

         trihelix  84 ql 85 
                       +
  OMERI12G02100.1 186 CM 187
                      77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-1990214No hitNo description
SuperFamilySSF813831.31E-6523578IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.9E-6531578No hitNo description
PfamPF006461.2E-11534587IPR001810F-box domain
SuperFamilySSF545182.38E-97584771IPR025659Tubby C-terminal-like domain
Gene3DG3DSA:3.20.90.103.5E-92594767IPR000007Tubby, C-terminal
PfamPF011672.5E-93599915IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73651667IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73667691IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73717744IPR000007Tubby, C-terminal
Gene3DG3DSA:3.20.90.103.5E-92812915IPR000007Tubby, C-terminal
SuperFamilySSF545182.38E-97816921IPR025659Tubby C-terminal-like domain
PRINTSPR015731.7E-73822839IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73840856IPR000007Tubby, C-terminal
PROSITE patternPS012000840853IPR018066Tubby, C-terminal, conserved site
PRINTSPR015731.7E-73878897IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73899921IPR000007Tubby, C-terminal
PROSITE patternPS012010906921IPR018066Tubby, C-terminal, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHHHRQHAKN  60
GMSDDEEHGV NEDATDSQSG KGKKGAAWQR MKWTDSMVKL LITAVSYTGE DPGADSGAGK  120
RNSAIMQKKG KWKAISKVMG ERGCSVSPQQ CEDKFNDLNK RYKRLTDILG RGTACKIVEN  180
HALLDCMSNL SDKMKDDARK ILSSKHLFYE EMCSYHNNNR VSLPEDPALQ RSLQLALRCK  240
DEHDLRRGTS GDADEDDQSV DSDSKEENDE EHYTLQGDKS ALPMHKRLRH MTDQEDVGFG  300
NSSSSHGCSR RSDSHGISLD INKAFPDGTN LALAQKDLAT QSADLEEQRL QIEVQAVYLA  360
KQRLKWERFS KNKDRELEQM RLENEKMRLE NKRLELEVAD GFCWTFSICI MALYQSSASS  420
RVPPTLVQPS PLVLSFPSSS SSSSDPHAAS ASASASLPRR PPLAAAGATP ERGEAEMSFR  480
SIVRDVRDGF GSLSRRGFEV RLVGHRRGRS HSAVHELRDG HAAAAAADVV QSSCWANLPP  540
ELLRDVIERL EASEAAWPSR KNVVACAAVC RTWRDMCREI VKNPEFCGKI TFPVSLKQPG  600
PRDGAIQCFI KRDKSTQTYN LYLCLSSAVL VESGKFLLSA KRYSRATCTE YTIFMSADNT  660
SRSSNMYIGK LRSNLLGTKF VIYDTQPPCN TANVSQSGKT SRRFYSRKVS PKNPSSTYSI  720
AQVSYELNVL GTRGPRRMNC VMHSIPASSL EAGGTVPCQP DSVLARSLDE SFGSISFSKS  780
SIMDRSIRFS SSRYSDISVG GPMVGGQALG DSDESKERPL ILRNKAPRWH EQLQCWCLNF  840
KGRVTVASVK NFQLVAATQP AAGAPTPSQP APPPPPEHDK VILQFGKVAK DMFTMDYRYP  900
LSAFQAFAIC LSSFDTKLAC E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2fim_A7e-4659892131276Tubby related protein 1
2fim_B7e-4659892131276Tubby related protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8470040.0EU847004.1 Oryza sativa Japonica Group clone KCB831C11 TUBBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0F9R50.0A0A0E0F9R5_9ORYZ; Tubby-like F-box protein
STRINGOGLUM12G04560.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-94sequence-specific DNA binding transcription factors