PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G02100.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 847aa    MW: 94703.6 Da    PI: 8.4446
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G02100.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.42.5e-2592187185
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d
  OMERI12G02100.3  92 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 185
                      7*********************9877778889999**********************************************5499999999988 PP

         trihelix  84 ql 85 
                       +
  OMERI12G02100.3 186 CM 187
                      77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-1990214No hitNo description
SuperFamilySSF813831.16E-6449504IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.6E-6457504No hitNo description
PfamPF006461.1E-11460513IPR001810F-box domain
SuperFamilySSF545181.99E-97510697IPR025659Tubby C-terminal-like domain
Gene3DG3DSA:3.20.90.102.9E-92520693IPR000007Tubby, C-terminal
PfamPF011672.1E-93525841IPR000007Tubby, C-terminal
PRINTSPR015731.2E-73577593IPR000007Tubby, C-terminal
PRINTSPR015731.2E-73593617IPR000007Tubby, C-terminal
PRINTSPR015731.2E-73643670IPR000007Tubby, C-terminal
Gene3DG3DSA:3.20.90.102.9E-92738841IPR000007Tubby, C-terminal
SuperFamilySSF545181.99E-97742847IPR025659Tubby C-terminal-like domain
PRINTSPR015731.2E-73748765IPR000007Tubby, C-terminal
PRINTSPR015731.2E-73766782IPR000007Tubby, C-terminal
PROSITE patternPS012000766779IPR018066Tubby, C-terminal, conserved site
PRINTSPR015731.2E-73804823IPR000007Tubby, C-terminal
PRINTSPR015731.2E-73825847IPR000007Tubby, C-terminal
PROSITE patternPS012010832847IPR018066Tubby, C-terminal, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHHHRQHAKN  60
GMSDDEEHGV NEDATDSQSG KGKKGAAWQR MKWTDSMVKL LITAVSYTGE DPGADSGAGK  120
RNSAIMQKKG KWKAISKVMG ERGCSVSPQQ CEDKFNDLNK RYKRLTDILG RGTACKIVEN  180
HALLDCMSNL SDKMKDDARK ILSSKHLFYE EMCSYHNNNR VSLPEDPALQ RSLQLALRCK  240
DEHDLRRGTS GDADEDDQSV DSDSKEENDE EHYTLQGDKS ALPMHKRLRH MTDQEDVGFG  300
NSSSSHGCSR RSDSHGISLD INKAFPDGTN LALAQKDLAT QSADLEEQRL QIEVQAVYLA  360
KQRLKWERFS KNKDRELEQM RLENEKMRLE NKRLELERGE AEMSFRSIVR DVRDGFGSLS  420
RRGFEVRLVG HRRGRSHSAV HELRDGHAAA AAADVVQSSC WANLPPELLR DVIERLEASE  480
AAWPSRKNVV ACAAVCRTWR DMCREIVKNP EFCGKITFPV SLKQPGPRDG AIQCFIKRDK  540
STQTYNLYLC LSSAVLVESG KFLLSAKRYS RATCTEYTIF MSADNTSRSS NMYIGKLRSN  600
LLGTKFVIYD TQPPCNTANV SQSGKTSRRF YSRKVSPKNP SSTYSIAQVS YELNVLGTRG  660
PRRMNCVMHS IPASSLEAGG TVPCQPDSVL ARSLDESFGS ISFSKSSIMD RSIRFSSSRY  720
SDISVGGPMV GGQALGDSDE SKERPLILRN KAPRWHEQLQ CWCLNFKGRV TVASVKNFQL  780
VAATQPAAGA PTPSQPAPPP PPEHDKVILQ FGKVAKDMFT MDYRYPLSAF QAFAICLSSF  840
DTKLACE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2fim_A7e-4652484731276Tubby related protein 1
2fim_B7e-4652484731276Tubby related protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8470040.0EU847004.1 Oryza sativa Japonica Group clone KCB831C11 TUBBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619922.10.0tubby-like F-box protein 14
SwissprotQ2QXB20.0TLP14_ORYSJ; Tubby-like F-box protein 14
TrEMBLA0A0E0F9R70.0A0A0E0F9R7_9ORYZ; Tubby-like F-box protein
STRINGOMERI12G02080.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-95sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q
    Identification of rice TUBBY-like genes and their evolution.
    FEBS J., 2008. 275(1): p. 163-71
    [PMID:18070109]
  3. Yang Z, et al.
    Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar.
    Genomics, 2008. 92(4): p. 246-53
    [PMID:18620041]