PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI12G04670.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 947aa MW: 103470 Da PI: 4.7376

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI12G04670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	55	102	1	48
TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+e Ed+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OMERI12G04670.1 55 KGNWTPEeEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 102 7998725789*****************.***********97 PP
2	Myb_DNA-binding	47.3	4.8e-15	108	150	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ OMERI12G04670.1 108 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 150 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.994	50	106	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-28	53	149	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-14	54	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-24	56	110	IPR009057	Homeodomain-like
CDD	cd00167	9.36E-14	57	102	No hit	No description
Pfam	PF13921	2.4E-15	58	119	No hit	No description
SMART	SM00717	4.4E-14	107	155	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.654	107	157	IPR017930	Myb domain
CDD	cd00167	6.66E-11	110	150	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-21	111	157	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence Send to blast
MSSVMMTSDN GKAPEKGGEA SGPSSAPQEG EISNEPQRRR PLSGRTTGPT RRSTKGNWTP 60 EEEDDIIVQM VNKLGPKKWS TIAQALPGRI GKQCRERWHN HLNPGINKEA WTQEEEITLI 120 HAHRMYGNKW AELTKFLPGR TDNAIKNHWN SSVKKKVDSY MSSGLLTQVS CLPLNEYSAH 180 CNSSPAVTQQ NSEDSGSYAV REVENSSVCS QSSLAKVSCS QVHNANVALG CDLQVNANVD 240 NNEAHDSQSS VGHEACYTSV GAVATAMPEV HYHVSSSNFD PDQHLQEEFA QGLNLHMSID 300 EVPSNSSFAD NPTICRIENH ERSLEPYDVA MEMPLSMLPS DSGAEQKLHF MSEADFNSPN 360 CLKSELWQDI SLQSLLSGPD AVETDSFSRS NHQSDVYSSQ ADNEFLAPPY LLQTSNSSSV 420 MEATYGQSPQ MSVPPSLFCS NVMTDVPSDN RSEPKEMTVS QAEMVTQSSS SSGDAEMSAN 480 PGSSNGSDIP SMMERIPECA DQQVTNAEEP EASIEKEPSV TPSATADEKQ DEGALFYEPP 540 RFPSMDVPFV SCDLVTSGDL QEYSPLGIRQ LMRSTMNVCT PMRLWGSPTH DESPDILLKS 600 AAKSFICTPS ILKKRHRDLV SPIPDKRIEK KSGTEKDCGV SDTSSIGIQT CFINATKDDA 660 VITKSVLRIE RSAFSKPLEK KLEFSDENKE NLDNTIEQAK DGQSAGNDKR IDEQARGERR 720 TATNITTTYD DLPGNLQPAG ILIEHNGDDL VSPDYGKNTM KQKQNTNMES LSVCKEGVSA 780 KKPAELIVEK SSACINVDYE YVNILADTPG IKRGLESPSA WKSPWFVDMQ FQGSYFVSPA 840 NGYDALGLVK QINVQTAAAL AEAREVLASG VQSENINSDK ENLENPDAKK EPGATTKLQA 900 KIKTEGKILD FNECATPIRS SDKKAGSSLG RSLSSPIPSS HLLKSFR

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence Send to blast

MSSVMMTSDN GKAPEKGGEA SGPSSAPQEG EISNEPQRRR PLSGRTTGPT RRSTKGNWTP  60
EEEDDIIVQM VNKLGPKKWS TIAQALPGRI GKQCRERWHN HLNPGINKEA WTQEEEITLI  120
HAHRMYGNKW AELTKFLPGR TDNAIKNHWN SSVKKKVDSY MSSGLLTQVS CLPLNEYSAH  180
CNSSPAVTQQ NSEDSGSYAV REVENSSVCS QSSLAKVSCS QVHNANVALG CDLQVNANVD  240
NNEAHDSQSS VGHEACYTSV GAVATAMPEV HYHVSSSNFD PDQHLQEEFA QGLNLHMSID  300
EVPSNSSFAD NPTICRIENH ERSLEPYDVA MEMPLSMLPS DSGAEQKLHF MSEADFNSPN  360
CLKSELWQDI SLQSLLSGPD AVETDSFSRS NHQSDVYSSQ ADNEFLAPPY LLQTSNSSSV  420
MEATYGQSPQ MSVPPSLFCS NVMTDVPSDN RSEPKEMTVS QAEMVTQSSS SSGDAEMSAN  480
PGSSNGSDIP SMMERIPECA DQQVTNAEEP EASIEKEPSV TPSATADEKQ DEGALFYEPP  540
RFPSMDVPFV SCDLVTSGDL QEYSPLGIRQ LMRSTMNVCT PMRLWGSPTH DESPDILLKS  600
AAKSFICTPS ILKKRHRDLV SPIPDKRIEK KSGTEKDCGV SDTSSIGIQT CFINATKDDA  660
VITKSVLRIE RSAFSKPLEK KLEFSDENKE NLDNTIEQAK DGQSAGNDKR IDEQARGERR  720
TATNITTTYD DLPGNLQPAG ILIEHNGDDL VSPDYGKNTM KQKQNTNMES LSVCKEGVSA  780
KKPAELIVEK SSACINVDYE YVNILADTPG IKRGLESPSA WKSPWFVDMQ FQGSYFVSPA  840
NGYDALGLVK QINVQTAAAL AEAREVLASG VQSENINSDK ENLENPDAKK EPGATTKLQA  900
KIKTEGKILD FNECATPIRS SDKKAGSSLG RSLSSPIPSS HLLKSFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-42	55	157	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-42	55	157	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ430051	0.0	AJ430051.1 Oryza sativa mRNA for transcription factor myb (myb3R1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878027.1	0.0	LOW QUALITY PROTEIN: transcription factor MYB3R-4-like
TrEMBL	A0A0E0FAR2	0.0	A0A0E0FAR2_9ORYZ; Uncharacterized protein
STRING	OMERI12G04700.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2495	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	5e-62	myb domain protein 3r-4