PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G08420.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 257aa    MW: 27780.3 Da    PI: 10.0849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G08420.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1448.3e-4591431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrF+Ptdeelvv+yL++++ g++l+ +  i++v+++ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v 
  OMERI12G08420.2   9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDLiP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVA 100
                      79*************************998556**************43..3447899************************************ PP

              NAM  94 sk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +         +  +vg+k++Lvfy+g+ p+g+ktdWvmheyrl
  OMERI12G08420.2 101 VPvaaaaptrTAVVVGMKRSLVFYRGKPPTGRKTDWVMHEYRL 143
                      99877777666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-506173IPR003441NAC domain
PROSITE profilePS5100549.4129173IPR003441NAC domain
PfamPF023651.0E-2610143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
METTTAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLIPPGW  60
SEQERYFFTC KEAKYVKGRR ANRATGAGYW KATGKEKPVA VPVAAAAPTR TAVVVGMKRS  120
LVFYRGKPPT GRKTDWVMHE YRLAGAGLAP CRRAADHPAR PAEGWVLCRV FRKKGSAAAS  180
TASPTADADD DDATTERADA AAAGVRFIDF FARADARRRR AASPVSSSCV TDASAEHCRE  240
QETTSRNGGA AAGDASD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-38517713169NO APICAL MERISTEM PROTEIN
1ut4_B2e-38517713169NO APICAL MERISTEM PROTEIN
1ut7_A2e-38517713169NO APICAL MERISTEM PROTEIN
1ut7_B2e-38517713169NO APICAL MERISTEM PROTEIN
4dul_A2e-38517713169NAC domain-containing protein 19
4dul_B2e-38517713169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432440.0AK243244.1 Oryza sativa Japonica Group cDNA, clone: J100046N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618303.11e-143NAC domain-containing protein 83
SwissprotQ9FY931e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0E0FC470.0A0A0E0FC47_9ORYZ; Uncharacterized protein
STRINGOMERI12G08230.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-50NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]