PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G08740.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 431aa    MW: 45682.9 Da    PI: 8.7956
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G08740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-23128172145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  OMERI12G08740.1 128 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 172
                      689***************************************986 PP
2QLQ58.61.9e-205793137
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++
  OMERI12G08740.1 57 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 93
                     59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-115793IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.9E-155892IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8365893IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.527128172IPR014977WRC domain
PfamPF088799.4E-20130171IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAMATPTTNG SFLLGSGGYP GAQMLSFSSS GHSGNAGLDC GSSDVARMQG VLARVRGPFT  60
PTQWMELEHQ ALIYKHIVAN APVPAGLLLP IRRSLHPPVF PHFSSGGILG SSSLGWGSFQ  120
LGYSGSADSE PGRCRRTDGK KWRCSRDAVV DQKYCERHIN RGRHRSRKHV EGQSSHTAKA  180
TVAAIAQPPM VASIGKSSGG HGVSNELTKT LATNRMLLDK ANLIERSQDY TNQQHNILQN  240
NTKGDNWSEE MSSQADYAVI PAGSLMNTPQ SANLNPIPQQ QPCKQSLFGK GIQHDDIQLS  300
ISIPVDNSDL PTNYNKAQMD HVVGSSSNGG NNARASWIPG SWEASIGGPL GEFFTNTSSA  360
SDDKGKSRHP PSLNLLADGH TTSPQLQSPT GVLQMTSFSS VPSSTVSSPA GSLCNGLLTS  420
GLVNAQTVQT L
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415570.0AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618984.10.0growth-regulating factor 7 isoform X1
SwissprotQ6AWY20.0GRF7_ORYSJ; Growth-regulating factor 7
TrEMBLA0A0E0FC860.0A0A0E0FC86_9ORYZ; Uncharacterized protein
STRINGOMERI12G08570.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-43growth-regulating factor 2