PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G08970.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25744.7 Da    PI: 8.6948
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G08970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.71.7e-241160251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rien+  rqvtfskRr g+lKKA+E+ vLCd++va i+fs +g+l+ y+s
  OMERI12G08970.1 11 RIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYAS 60
                     8**********************************************986 PP
2K-box65.81.5e-22941641686
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                      s++ ++ kL+ +ie L+++qR+l+G++L+sL+l+++qqLe+q+++sl++iRs+Kn+lll++i el++k ++
  OMERI12G08970.1  94 SMSYDHIKLRGKIEALKKSQRNLMGQELDSLTLQDIQQLEDQIDTSLNNIRSRKNNLLLKSIGELRQKANA 164
                      6788899*************************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.072262IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-34261IPR002100Transcription factor, MADS-box
CDDcd002652.54E-35376No hitNo description
SuperFamilySSF554552.09E-28385IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-26424IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231158IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-262439IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-263960IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.30292197IPR002487Transcription factor, K-box
PfamPF014861.2E-1795191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMGRGKVQVR RIENEVSRQV TFSKRRPGLL KKAHEIAVLC DVDVAAIVFS AKGNLFHYAS  60
SHTTMERILE KYDRHELLSE GNNVIEEFPE LEGSMSYDHI KLRGKIEALK KSQRNLMGQE  120
LDSLTLQDIQ QLEDQIDTSL NNIRSRKNNL LLKSIGELRQ KANAKNLLIL KLVGEMEKLL  180
MEKNTILEKK ITELETLHTS IRASPTEAAA PPACNTADAF VPNLNIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20275172MEF2C
5f28_B1e-20275172MEF2C
5f28_C1e-20275172MEF2C
5f28_D1e-20275172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2500750.0AY250075.1 Oryza sativa (japonica cultivar-group) MADS20 (MADS20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619865.21e-135MADS-box transcription factor 20
SwissprotQ2QQA31e-135MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A0E0FCB91e-166A0A0E0FCB9_9ORYZ; Uncharacterized protein
STRINGOMERI12G08810.11e-165(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-46AGAMOUS-like 8