PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G11270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 211aa    MW: 22560.5 Da    PI: 7.1866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G11270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-194999256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  OMERI12G11270.1 49 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 99
                     6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.9E-3749112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3249107IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2249107IPR016177DNA-binding domain
PROSITE profilePS5103224.48749106IPR001471AP2/ERF domain
CDDcd000185.16E-1749108No hitNo description
PRINTSPR003674.0E-115061IPR001471AP2/ERF domain
PfamPF008471.1E-125098IPR001471AP2/ERF domain
PRINTSPR003674.0E-117288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MCGGAIIYDY IPARRRVCAS DFWPDADDSD PHAPAPEKPP RAKRERKNQY RGIRQRPWGK  60
WAAEIRDPVK GVRVWLGTYP TAEAAARAYD RAARRIRGAK AKVNFPNDFG AAPAAGAAAT  120
AAKAVPRVAL APTPAVLPPP KMEAVSEGAG ACSSDEVKEL SEELLAYENY MSFLGIPYME  180
GGAASAAGAE EAAAPGGLWT FEDYELPSLA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2249106563ATERF1
3gcc_A4e-2249106563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117750.0AK111775.1 Oryza sativa Japonica Group cDNA clone:J023075G11, full insert sequence.
GenBankCT8324020.0CT832402.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630785.11e-104ethylene-responsive transcription factor ERF071
TrEMBLA0A0E0FD791e-147A0A0E0FD79_9ORYZ; Uncharacterized protein
STRINGOMERI12G11210.11e-148(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-24ERF family protein