PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12140.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 242aa    MW: 24719.3 Da    PI: 9.8828
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1115.8e-3550104660
           zf-Dof   6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                       +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvP+Gg++rk+ +
  OMERI12G12140.1  50 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 104
                      68**************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.9E-3050102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.51250104IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-205297IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEAPLHQSPV PLLPPPPPRV VGVQQQQQQE AVVPPPAMAA AAAAGGGGRE QCPRCASRDT  60
KFCYYNNYNT AQPRHFCRAC RRYWTLGGSL RNVPIGGSTR KRPRPSRPTR AAVAAAIAAA  120
AATSSHLSAQ QQPAPPPVVM SQHEVAAASG GGVGGGLLVS LLGAAPVLEG RLGSGIGFDL  180
LGGEQLGFGA MAMPPAPLLW PARVLEGGDA WKSAAAAAGV SYSPFPALWQ ELAGGGGAPQ  240
LM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100104KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548290.0AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878036.16e-83dof zinc finger protein MNB1A-like
TrEMBLA0A0E0FDM11e-168A0A0E0FDM1_9ORYZ; Uncharacterized protein
STRINGOMERI12G12080.11e-169(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-23DOF zinc finger protein 1