PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12160.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1644aa    MW: 187191 Da    PI: 9.1846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12160.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-14591331898
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +p kfa+ + g+   s  ++le ++g++++v++   k +++ vl++GW  F+++ +Lk+ D++vF+++g+s+f  +v++f+
  OMERI12G12160.2  59 VPTKFANIIRGQ--ISEVVKLEVPNGKTYDVQV--AKEQNELVLRSGWGAFARDYELKQCDILVFTYSGSSRF--KVRIFN 133
                      799999666766..6779***************..*********************************99999..999987 PP

2B349.67.3e-161832631298
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        + +++pk fa++ +g+   s   +le ++gr+++v++   k  ++ v+++GW+ F++a +L++gD++vF ++g+s f  +v++f+
  OMERI12G12160.2 183 LDKPVTIPKMFAKNVQGQ--ISGVAKLEVPDGRTYDVEI--AKEHNELVFRSGWEVFASAYELEQGDILVFAYSGNSHF--KVQIFN 263
                      555689******888888..6669***************..**********************************9999..999987 PP

3B354.91.6e-17370461199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+++ +  k   l +pkkf+++  gk   + +++le ++g+ ++v++  +  +++ vl++GW +F++  +Lk gD +vF ++g+s f  +v
  OMERI12G12160.2 370 FFKVMMSVSDIKDE-LAIPKKFTANVRGK--IPEQVRLEVSDGKMYNVQV--TEEQDELVLRSGWANFASTYQLKHGDLLVFIHSGHSHF--KV 456
                      99***999999987.********888666..3446***************..********************************999999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f+ 
  OMERI12G12160.2 457 LIFDP 461
                      99885 PP

4B335.71.6e-115876661292
                      HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      +sg lv++k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ +++ ++  l
  OMERI12G12160.2 587 ASGSLVFSKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRGNLLQEGDICVFEASKSkRGVAL 666
                      45679**********888..4558888887777*******..8888888*************************8876444444 PP

5B338.12.7e-127107961399
                      TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      + r +++ k+a+++     e++ ++l+  e+  + +  l+++ + + + l kGW +Fv++n+L++ D+++F+l+++ ++ +++v+++rk
  OMERI12G12160.2 710 QERKCFSVKYASKYLPH--EDQNMRLRLpETKYKCKAALRVDTSTNLHKLLKGWGKFVNDNKLEVHDICLFQLMKNkKKLTMTVHIIRK 796
                      45677888999999433..3445777763455778888877999999***************************999*********997 PP

6B357.32.9e-18836923197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF  +g+s f  +v
  OMERI12G12160.2 836 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIQSGNSHF--KV 920
                      67777..6678887.********9999994..559***************..*******************************8888888..66 PP

                      EEE CS
               B3  95 kvf 97 
                       ++
  OMERI12G12160.2 921 WIY 923
                      665 PP

7B340.35.8e-1310521133893
                       -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3    8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                       + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l ++  +++y l++GW +F + n+L+egD++vF+ ++++++  v
  OMERI12G12160.2 1052 KASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSLTWDIGLDIDT-DDQYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 1133
                       55677899***********888767..56665537889******4333.346*************************8887666..3 PP

8B337.64e-12121012901394
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
               B3   13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94  
                       s+ ++++ k+a+++  + e++ +++   +  +s++ k  ++ + + + l++GW +Fv++n+Lk gD+++F+l+++ ++ +++v
  OMERI12G12160.2 1210 SRYMCFSAKYAAKYL-PRENN-KIMRLRLPKKSYKYKAVFKINNKVHKLGGGWGKFVDDNKLKLGDICLFQLMKDkKKLTMMV 1290
                       556788889999993.33334.455555566777777777999999***************************9867776666 PP

9B342.89.3e-14132814041494
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                       + +++p k ae ++g+ ++     l+++sg++W+v +  +k  ++ +l +GW++F+ka++L+e+D + F+ +g+ ++++ +
  OMERI12G12160.2 1328 HGISIPEKVAEIFSGQITK--GFNLKSPSGETWRVGI--EKVADELILMSGWEDFAKAHELQENDLLFFTCNGHGNGSCSF 1404
                       459*******777777555..59999***********..*******************************77665554443 PP

10B344.42.9e-1415371633197
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89  
                       f+ vl +++v ++++l++p +fa++h +   +s ++ l    + ++W+vk+ y +++ +++     W +F ++n+L+eg +++F+l++  ++
  OMERI12G12160.2 1537 FVAVLQTAHVRRRNILIVPTRFAADHLER--KSHDILLIRpNRKQKWSVKYYYlSNTTRGFNCH-RWIKFIRENRLREGNVCIFELMKGaRR 1625
                       7889999*******************544..45567776636779******8865555555544.8*******************9976688 PP

                       E..EEEEE CS
               B3   90 felvvkvf 97  
                        +++v+v+
  OMERI12G12160.2 1626 PTMTVHVI 1633
                       88888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1823137IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-655135IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1855137IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.29359135IPR003340B3 DNA binding domain
CDDcd100177.45E-1759133No hitNo description
PfamPF023629.1E-1259133IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224172265IPR003340B3 DNA binding domain
SMARTSM010198.3E-9173265IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-19175267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-18176267IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-13182263IPR003340B3 DNA binding domain
CDDcd100178.59E-17188263No hitNo description
SuperFamilySSF1019361.53E-20363462IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-21365462IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-17368460No hitNo description
PROSITE profilePS5086312.76369462IPR003340B3 DNA binding domain
PfamPF023625.8E-15370460IPR003340B3 DNA binding domain
SMARTSM010191.2E-10370462IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-13570673IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-14571674IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124576674IPR003340B3 DNA binding domain
SMARTSM010193.7E-4578674IPR003340B3 DNA binding domain
PfamPF023628.9E-9587666IPR003340B3 DNA binding domain
CDDcd100171.02E-9588672No hitNo description
Gene3DG3DSA:2.40.330.102.8E-13695797IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-15697799IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0015699797IPR003340B3 DNA binding domain
PfamPF023621.5E-10709796IPR003340B3 DNA binding domain
CDDcd100171.58E-10710795No hitNo description
PROSITE profilePS508638.67757797IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-21830928IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-21832928IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.084833926IPR003340B3 DNA binding domain
CDDcd100171.81E-19834924No hitNo description
PfamPF023623.4E-16836922IPR003340B3 DNA binding domain
SMARTSM010191.4E-15836926IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1510391137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-1610391138IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11110451140IPR003340B3 DNA binding domain
SMARTSM010194.4E-510451143IPR003340B3 DNA binding domain
PfamPF023621.0E-910531132IPR003340B3 DNA binding domain
CDDcd100174.09E-1010601125No hitNo description
Gene3DG3DSA:2.40.330.109.5E-1611891295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-1811901296IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-1511951290No hitNo description
SMARTSM010190.001511971294IPR003340B3 DNA binding domain
PROSITE profilePS5086310.16511981294IPR003340B3 DNA binding domain
PfamPF023623.0E-1012091290IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-1713111414IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.16713151412IPR003340B3 DNA binding domain
CDDcd100172.81E-1313171410No hitNo description
SMARTSM010193.3E-713181412IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-1613181414IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-1113271402IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1715301635IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-2015311631IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-1715351631No hitNo description
PROSITE profilePS5086313.15515371636IPR003340B3 DNA binding domain
PfamPF023623.9E-1215371633IPR003340B3 DNA binding domain
SMARTSM010196.0E-1015371637IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1644 aa     Download sequence    Send to blast
MRKSFTTCKE CIFYHYWNHM GDQKRSFINV MIGDFVPNAL HEVHSKLDVG LIWLFLQAVP  60
TKFANIIRGQ ISEVVKLEVP NGKTYDVQVA KEQNELVLRS GWGAFARDYE LKQCDILVFT  120
YSGSSRFKVR IFNPSGCEKE LSCVMMNSTP CGHEGSMPYH DNHVQSPSER SSQHATVLPP  180
VLLDKPVTIP KMFAKNVQGQ ISGVAKLEVP DGRTYDVEIA KEHNELVFRS GWEVFASAYE  240
LEQGDILVFA YSGNSHFKVQ IFNPSNCEKE LSCVMMNRSI SDDNHRQSPS WESLVPASRR  300
RRSPPACRLT APLPASQHAA YLQAAPPPAT AVRINVALKF IIVMNKSGTT CMDCITNHYW  360
LHMDDRERYF FKVMMSVSDI KDELAIPKKF TANVRGKIPE QVRLEVSDGK MYNVQVTEEQ  420
DELVLRSGWA NFASTYQLKH GDLLVFIHSG HSHFKVLIFD PSYTEKEFSC VVTDSTSHVH  480
ERSISHDNHL QSPRSVILGK NYSLCSSRKR SRMNPADYPS QRPDVPSSED IKDPMSSGGL  540
QKSKKSCYVL PMLYSMTSAQ EAEVLALEKK IQPQIPLYIT AMDISVASGS LVFSKDYAVR  600
YLLDQNRTIK LCQSGGSKTW DISLDMDTDD LYALSTGWLD FFRGNLLQEG DICVFEASKS  660
KRGVALTFHP FKESHCPKSS EYTLSTKSPT RRVPKRDYFA TNLTNLTDQQ ERKCFSVKYA  720
SKYLPHEDQN MRLRLPETKY KCKAALRVDT STNLHKLLKG WGKFVNDNKL EVHDICLFQL  780
MKNKKKLTMT VHIIRKGECS GSLCCRCCGM EKSHRVCKNC VANHYWLHMD NHGKSFIKVM  840
ITDFKNGVTI PAKFARNFGG QMSGTVKLET RNGKTYEVQV AKELNNLVLR SGWERFASAY  900
ELEKGDILVF IQSGNSHFKV WIYDPSACEK ELPCIITEQL PRVQQRSISH DNHTRLKRNA  960
KSAKLYVDSS GHTKETSEIN PASSPSWKPT ERVPFSEELD EPVDLANVQK ATKSFYSLPR  1020
MCNLTSAQKA EVDALEKRIK PQIPFYITVI DKASATDGLL AISKDYAVSY LLDKNETIKL  1080
CHSGRSLTWD IGLDIDTDDQ YALSTGWLDF IRNNHLQEGD ICVFEASKNK RGVALIFHPL  1140
KQSHHPKPPG CVPSTKFPRH GVSKPNYIVS RFTTLSGQLK IKVEAKVQAI QSEVPIFVAV  1200
MRESFIRGRS RYMCFSAKYA AKYLPRENNK IMRLRLPKKS YKYKAVFKIN NKVHKLGGGW  1260
GKFVDDNKLK LGDICLFQLM KDKKKLTMMV MGEKGCESCR KWQEHYYKEH MDVSRIRFFR  1320
LMTGDFAHGI SIPEKVAEIF SGQITKGFNL KSPSGETWRV GIEKVADELI LMSGWEDFAK  1380
AHELQENDLL FFTCNGHGNG SCSFDVLIFD ASGCEKVSCF FTGKKNSYMC KNFNSIGGQI  1440
AGKYLSSDSE DTSTPSVLIG SPHKASTSKK LSGKTKTNPR KEPEDPNCSH WHVIEEKNTD  1500
DDEHADYHYT RFANYLTGEE RDEIFSLVSL QPGNPVFVAV LQTAHVRRRN ILIVPTRFAA  1560
DHLERKSHDI LLIRPNRKQK WSVKYYYLSN TTRGFNCHRW IKFIRENRLR EGNVCIFELM  1620
KGARRPTMTV HVICKADNRF VLLS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0E0FDM40.0A0A0E0FDM4_9ORYZ; Uncharacterized protein
STRINGOMERI12G12100.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-27B3 family protein