![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMERI12G12160.3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
| Family | B3 | ||||||||
| Protein Properties | Length: 1594aa MW: 181949 Da PI: 9.0356 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 45.2 | 1.7e-14 | 59 | 133 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+p kfa+ + g+ s ++le ++g++++v++ k +++ vl++GW F+++ +Lk+ D++vF+++g+s+f +v++f+
OMERI12G12160.3 59 VPTKFANIIRGQ--ISEVVKLEVPNGKTYDVQV--AKEQNELVLRSGWGAFARDYELKQCDILVFTYSGSSRF--KVRIFN 133
799999666766..6779***************..*********************************99999..999987 PP
| |||||||
| 2 | B3 | 49.6 | 7e-16 | 183 | 263 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+ +++pk fa++ +g+ s +le ++gr+++v++ k ++ v+++GW+ F++a +L++gD++vF ++g+s f +v++f+
OMERI12G12160.3 183 LDKPVTIPKMFAKNVQGQ--ISGVAKLEVPDGRTYDVEI--AKEHNELVFRSGWEVFASAYELEQGDILVFAYSGNSHF--KVQIFN 263
555689******888888..6669***************..**********************************9999..999987 PP
| |||||||
| 3 | B3 | 54.9 | 1.6e-17 | 320 | 411 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
ffkv+++ + k l +pkkf+++ gk + +++le ++g+ ++v++ + +++ vl++GW +F++ +Lk gD +vF ++g+s f +v
OMERI12G12160.3 320 FFKVMMSVSDIKDE-LAIPKKFTANVRGK--IPEQVRLEVSDGKMYNVQV--TEEQDELVLRSGWANFASTYQLKHGDLLVFIHSGHSHF--KV 406
99***999999987.********888666..3446***************..********************************999999..99 PP
EEE-S CS
B3 95 kvfrk 99
+f+
OMERI12G12160.3 407 LIFDP 411
99885 PP
| |||||||
| 4 | B3 | 35.7 | 1.5e-11 | 537 | 616 | 12 | 92 |
HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
B3 12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92
+sg lv++k++a ++ ++ +++t++l ++ g ++W++ l + + y l++GW +F + n L+egD++vF+ +++ ++ l
OMERI12G12160.3 537 ASGSLVFSKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRGNLLQEGDICVFEASKSkRGVAL 616
45679**********888..4558888887777*******..8888888*************************8876444444 PP
| |||||||
| 5 | B3 | 38.2 | 2.6e-12 | 660 | 746 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
+ r +++ k+a+++ e++ ++l+ e+ + + l+++ + + + l kGW +Fv++n+L++ D+++F+l+++ ++ +++v+++rk
OMERI12G12160.3 660 QERKCFSVKYASKYLPH--EDQNMRLRLpETKYKCKAALRVDTSTNLHKLLKGWGKFVNDNKLEVHDICLFQLMKNkKKLTMTVHIIRK 746
45677888999999433..3445777763455778888877999999***************************999*********997 PP
| |||||||
| 6 | B3 | 57.3 | 2.8e-18 | 786 | 873 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f+kv+ +k+g +++p kfa+++gg+ s t++le+++g+++ev++ k + vl++GW++F++a +L+ gD++vF +g+s f +v
OMERI12G12160.3 786 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIQSGNSHF--KV 870
67777..6678887.********9999994..559***************..*******************************8888888..66 PP
EEE CS
B3 95 kvf 97
++
OMERI12G12160.3 871 WIY 873
665 PP
| |||||||
| 7 | B3 | 40.3 | 5.6e-13 | 1002 | 1083 | 8 | 93 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
+ + + g+l ++k++a ++ ++k+e t++l + ++ +W++ l ++ +++y l++GW +F + n+L+egD++vF+ ++++++ v
OMERI12G12160.3 1002 KASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSLTWDIGLDIDT-DDQYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 1083
55677899***********888767..56665537889******4333.346*************************8887666..3 PP
| |||||||
| 8 | B3 | 37.6 | 3.9e-12 | 1160 | 1240 | 13 | 94 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94
s+ ++++ k+a+++ + e++ +++ + +s++ k ++ + + + l++GW +Fv++n+Lk gD+++F+l+++ ++ +++v
OMERI12G12160.3 1160 SRYMCFSAKYAAKYL-PRENN-KIMRLRLPKKSYKYKAVFKINNKVHKLGGGWGKFVDDNKLKLGDICLFQLMKDkKKLTMMV 1240
556788889999993.33334.455555566777777777999999***************************9867776666 PP
| |||||||
| 9 | B3 | 42.9 | 9e-14 | 1278 | 1354 | 14 | 94 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
+ +++p k ae ++g+ ++ l+++sg++W+v + +k ++ +l +GW++F+ka++L+e+D + F+ +g+ ++++ +
OMERI12G12160.3 1278 HGISIPEKVAEIFSGQITK--GFNLKSPSGETWRVGI--EKVADELILMSGWEDFAKAHELQENDLLFFTCNGHGNGSCSF 1354
459*******777777555..59999***********..*******************************77665554443 PP
| |||||||
| 10 | B3 | 44.5 | 2.8e-14 | 1487 | 1583 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
f+ vl +++v ++++l++p +fa++h + +s ++ l + ++W+vk+ y +++ +++ W +F ++n+L+eg +++F+l++ ++
OMERI12G12160.3 1487 FVAVLQTAHVRRRNILIVPTRFAADHLER--KSHDILLIRpNRKQKWSVKYYYlSNTTRGFNCH-RWIKFIRENRLREGNVCIFELMKGaRR 1575
7889999*******************544..45567776636779******8865555555544.8*******************9976688 PP
E..EEEEE CS
B3 90 felvvkvf 97
+++v+v+
OMERI12G12160.3 1576 PTMTVHVI 1583
88888775 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 2.2E-18 | 23 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.35E-18 | 55 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 2.8E-6 | 55 | 135 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.293 | 59 | 135 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.08E-16 | 59 | 133 | No hit | No description |
| Pfam | PF02362 | 8.8E-12 | 59 | 133 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.224 | 172 | 265 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 8.3E-9 | 173 | 265 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 8.6E-19 | 175 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.31E-18 | 176 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 9.9E-14 | 182 | 263 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.28E-16 | 188 | 263 | No hit | No description |
| SuperFamily | SSF101936 | 1.47E-20 | 313 | 412 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 6.9E-21 | 315 | 412 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 7.37E-17 | 318 | 410 | No hit | No description |
| PROSITE profile | PS50863 | 12.76 | 319 | 412 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.2E-10 | 320 | 412 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 5.6E-15 | 320 | 410 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.6E-13 | 520 | 623 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.24E-14 | 521 | 624 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 11.124 | 526 | 624 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.7E-4 | 528 | 624 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 8.6E-9 | 537 | 616 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.47E-9 | 538 | 622 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 2.7E-13 | 645 | 747 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.28E-15 | 647 | 749 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 0.0015 | 649 | 747 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.5E-10 | 659 | 746 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 2.15E-10 | 660 | 745 | No hit | No description |
| PROSITE profile | PS50863 | 8.67 | 707 | 747 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 1.55E-21 | 780 | 878 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.5E-21 | 782 | 878 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 13.084 | 783 | 876 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 2.94E-19 | 784 | 874 | No hit | No description |
| SMART | SM01019 | 1.4E-15 | 786 | 876 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.3E-16 | 786 | 872 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.1E-15 | 989 | 1087 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.43E-16 | 989 | 1088 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 4.4E-5 | 995 | 1093 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.111 | 995 | 1090 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 9.7E-10 | 1003 | 1082 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 5.77E-10 | 1010 | 1075 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 9.1E-16 | 1139 | 1245 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 9.42E-18 | 1140 | 1246 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 5.66E-15 | 1145 | 1240 | No hit | No description |
| SMART | SM01019 | 0.0015 | 1147 | 1244 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 10.165 | 1148 | 1244 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.9E-10 | 1159 | 1240 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 5.1E-17 | 1261 | 1364 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 12.167 | 1265 | 1362 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 4.14E-13 | 1267 | 1360 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 3.1E-16 | 1268 | 1364 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 3.3E-7 | 1268 | 1362 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 5.1E-11 | 1277 | 1352 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.9E-17 | 1480 | 1585 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 8.83E-20 | 1481 | 1581 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.92E-17 | 1485 | 1581 | No hit | No description |
| PROSITE profile | PS50863 | 13.155 | 1487 | 1586 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 6.0E-10 | 1487 | 1587 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.7E-12 | 1487 | 1583 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0005773 | Cellular Component | vacuole | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1594 aa Download sequence Send to blast |
MRKSFTTCKE CIFYHYWNHM GDQKRSFINV MIGDFVPNAL HEVHSKLDVG LIWLFLQAVP 60 TKFANIIRGQ ISEVVKLEVP NGKTYDVQVA KEQNELVLRS GWGAFARDYE LKQCDILVFT 120 YSGSSRFKVR IFNPSGCEKE LSCVMMNSTP CGHEGSMPYH DNHVQSPSER SSQHATVLPP 180 VLLDKPVTIP KMFAKNVQGQ ISGVAKLEVP DGRTYDVEIA KEHNELVFRS GWEVFASAYE 240 LEQGDILVFA YSGNSHFKVQ IFNPSNCEKE LSCVMMNRSI SDDNHRQSPS WERMNKSGTT 300 CMDCITNHYW LHMDDRERYF FKVMMSVSDI KDELAIPKKF TANVRGKIPE QVRLEVSDGK 360 MYNVQVTEEQ DELVLRSGWA NFASTYQLKH GDLLVFIHSG HSHFKVLIFD PSYTEKEFSC 420 VVTDSTSHVH ERSISHDNHL QSPRSVILGK NYSLCSSRKR SRMNPADYPS QRPDVPSSED 480 IKDPMSSGGL QKSKKSCYVL PMLYSMTSAQ EAEVLALEKK IQPQIPLYIT AMDISVASGS 540 LVFSKDYAVR YLLDQNRTIK LCQSGGSKTW DISLDMDTDD LYALSTGWLD FFRGNLLQEG 600 DICVFEASKS KRGVALTFHP FKESHCPKSS EYTLSTKSPT RRVPKRDYFA TNLTNLTDQQ 660 ERKCFSVKYA SKYLPHEDQN MRLRLPETKY KCKAALRVDT STNLHKLLKG WGKFVNDNKL 720 EVHDICLFQL MKNKKKLTMT VHIIRKGECS GSLCCRCCGM EKSHRVCKNC VANHYWLHMD 780 NHGKSFIKVM ITDFKNGVTI PAKFARNFGG QMSGTVKLET RNGKTYEVQV AKELNNLVLR 840 SGWERFASAY ELEKGDILVF IQSGNSHFKV WIYDPSACEK ELPCIITEQL PRVQQRSISH 900 DNHTRLKRNA KSAKLYVDSS GHTKETSEIN PASSPSWKPT ERVPFSEELD EPVDLANVQK 960 ATKSFYSLPR MCNLTSAQKA EVDALEKRIK PQIPFYITVI DKASATDGLL AISKDYAVSY 1020 LLDKNETIKL CHSGRSLTWD IGLDIDTDDQ YALSTGWLDF IRNNHLQEGD ICVFEASKNK 1080 RGVALIFHPL KQSHHPKPPG CVPSTKFPRH GVSKPNYIVS RFTTLSGQLK IKVEAKVQAI 1140 QSEVPIFVAV MRESFIRGRS RYMCFSAKYA AKYLPRENNK IMRLRLPKKS YKYKAVFKIN 1200 NKVHKLGGGW GKFVDDNKLK LGDICLFQLM KDKKKLTMMV MGEKGCESCR KWQEHYYKEH 1260 MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL KSPSGETWRV GIEKVADELI 1320 LMSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD ASGCEKVSCF FTGKKNSYMC 1380 KNFNSIGGQI AGKYLSSDSE DTSTPSVLIG SPHKASTSKK LSGKTKTNPR KEPEDPNCSH 1440 WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL QPGNPVFVAV LQTAHVRRRN 1500 ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN TTRGFNCHRW IKFIRENRLR 1560 EGNVCIFELM KGARRPTMTV HVICKADNRF VLLS |
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00468 | DAP | Transfer from AT4G33280 | Download |
| |||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK241993 | 0.0 | AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025878051.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080 | ||||
| Swissprot | Q2QMT6 | 0.0 | Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080 | ||||
| TrEMBL | A0A0E0FDM5 | 0.0 | A0A0E0FDM5_9ORYZ; Uncharacterized protein | ||||
| STRING | OMERI12G12100.1 | 0.0 | (Oryza meridionalis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G33280.1 | 7e-27 | B3 family protein | ||||




