PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12160.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1594aa    MW: 181949 Da    PI: 9.0356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12160.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-14591331898
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +p kfa+ + g+   s  ++le ++g++++v++   k +++ vl++GW  F+++ +Lk+ D++vF+++g+s+f  +v++f+
  OMERI12G12160.3  59 VPTKFANIIRGQ--ISEVVKLEVPNGKTYDVQV--AKEQNELVLRSGWGAFARDYELKQCDILVFTYSGSSRF--KVRIFN 133
                      799999666766..6779***************..*********************************99999..999987 PP

2B349.67e-161832631298
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        + +++pk fa++ +g+   s   +le ++gr+++v++   k  ++ v+++GW+ F++a +L++gD++vF ++g+s f  +v++f+
  OMERI12G12160.3 183 LDKPVTIPKMFAKNVQGQ--ISGVAKLEVPDGRTYDVEI--AKEHNELVFRSGWEVFASAYELEQGDILVFAYSGNSHF--KVQIFN 263
                      555689******888888..6669***************..**********************************9999..999987 PP

3B354.91.6e-17320411199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+++ +  k   l +pkkf+++  gk   + +++le ++g+ ++v++  +  +++ vl++GW +F++  +Lk gD +vF ++g+s f  +v
  OMERI12G12160.3 320 FFKVMMSVSDIKDE-LAIPKKFTANVRGK--IPEQVRLEVSDGKMYNVQV--TEEQDELVLRSGWANFASTYQLKHGDLLVFIHSGHSHF--KV 406
                      99***999999987.********888666..3446***************..********************************999999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f+ 
  OMERI12G12160.3 407 LIFDP 411
                      99885 PP

4B335.71.5e-115376161292
                      HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      +sg lv++k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ +++ ++  l
  OMERI12G12160.3 537 ASGSLVFSKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRGNLLQEGDICVFEASKSkRGVAL 616
                      45679**********888..4558888887777*******..8888888*************************8876444444 PP

5B338.22.6e-126607461399
                      TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      + r +++ k+a+++     e++ ++l+  e+  + +  l+++ + + + l kGW +Fv++n+L++ D+++F+l+++ ++ +++v+++rk
  OMERI12G12160.3 660 QERKCFSVKYASKYLPH--EDQNMRLRLpETKYKCKAALRVDTSTNLHKLLKGWGKFVNDNKLEVHDICLFQLMKNkKKLTMTVHIIRK 746
                      45677888999999433..3445777763455778888877999999***************************999*********997 PP

6B357.32.8e-18786873197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF  +g+s f  +v
  OMERI12G12160.3 786 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIQSGNSHF--KV 870
                      67777..6678887.********9999994..559***************..*******************************8888888..66 PP

                      EEE CS
               B3  95 kvf 97 
                       ++
  OMERI12G12160.3 871 WIY 873
                      665 PP

7B340.35.6e-1310021083893
                       -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3    8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                       + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l ++  +++y l++GW +F + n+L+egD++vF+ ++++++  v
  OMERI12G12160.3 1002 KASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSLTWDIGLDIDT-DDQYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 1083
                       55677899***********888767..56665537889******4333.346*************************8887666..3 PP

8B337.63.9e-12116012401394
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
               B3   13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94  
                       s+ ++++ k+a+++  + e++ +++   +  +s++ k  ++ + + + l++GW +Fv++n+Lk gD+++F+l+++ ++ +++v
  OMERI12G12160.3 1160 SRYMCFSAKYAAKYL-PRENN-KIMRLRLPKKSYKYKAVFKINNKVHKLGGGWGKFVDDNKLKLGDICLFQLMKDkKKLTMMV 1240
                       556788889999993.33334.455555566777777777999999***************************9867776666 PP

9B342.99e-14127813541494
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                       + +++p k ae ++g+ ++     l+++sg++W+v +  +k  ++ +l +GW++F+ka++L+e+D + F+ +g+ ++++ +
  OMERI12G12160.3 1278 HGISIPEKVAEIFSGQITK--GFNLKSPSGETWRVGI--EKVADELILMSGWEDFAKAHELQENDLLFFTCNGHGNGSCSF 1354
                       459*******777777555..59999***********..*******************************77665554443 PP

10B344.52.8e-1414871583197
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89  
                       f+ vl +++v ++++l++p +fa++h +   +s ++ l    + ++W+vk+ y +++ +++     W +F ++n+L+eg +++F+l++  ++
  OMERI12G12160.3 1487 FVAVLQTAHVRRRNILIVPTRFAADHLER--KSHDILLIRpNRKQKWSVKYYYlSNTTRGFNCH-RWIKFIRENRLREGNVCIFELMKGaRR 1575
                       7889999*******************544..45567776636779******8865555555544.8*******************9976688 PP

                       E..EEEEE CS
               B3   90 felvvkvf 97  
                        +++v+v+
  OMERI12G12160.3 1576 PTMTVHVI 1583
                       88888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1823137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1855137IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-655135IPR003340B3 DNA binding domain
PROSITE profilePS5086311.29359135IPR003340B3 DNA binding domain
CDDcd100171.08E-1659133No hitNo description
PfamPF023628.8E-1259133IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224172265IPR003340B3 DNA binding domain
SMARTSM010198.3E-9173265IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-19175267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-18176267IPR015300DNA-binding pseudobarrel domain
PfamPF023629.9E-14182263IPR003340B3 DNA binding domain
CDDcd100171.28E-16188263No hitNo description
SuperFamilySSF1019361.47E-20313412IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-21315412IPR015300DNA-binding pseudobarrel domain
CDDcd100177.37E-17318410No hitNo description
PROSITE profilePS5086312.76319412IPR003340B3 DNA binding domain
SMARTSM010191.2E-10320412IPR003340B3 DNA binding domain
PfamPF023625.6E-15320410IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-13520623IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-14521624IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124526624IPR003340B3 DNA binding domain
SMARTSM010193.7E-4528624IPR003340B3 DNA binding domain
PfamPF023628.6E-9537616IPR003340B3 DNA binding domain
CDDcd100171.47E-9538622No hitNo description
Gene3DG3DSA:2.40.330.102.7E-13645747IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-15647749IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0015649747IPR003340B3 DNA binding domain
PfamPF023621.5E-10659746IPR003340B3 DNA binding domain
CDDcd100172.15E-10660745No hitNo description
PROSITE profilePS508638.67707747IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-21780878IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-21782878IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.084783876IPR003340B3 DNA binding domain
CDDcd100172.94E-19784874No hitNo description
SMARTSM010191.4E-15786876IPR003340B3 DNA binding domain
PfamPF023623.3E-16786872IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-159891087IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-169891088IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-59951093IPR003340B3 DNA binding domain
PROSITE profilePS5086312.1119951090IPR003340B3 DNA binding domain
PfamPF023629.7E-1010031082IPR003340B3 DNA binding domain
CDDcd100175.77E-1010101075No hitNo description
Gene3DG3DSA:2.40.330.109.1E-1611391245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-1811401246IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-1511451240No hitNo description
SMARTSM010190.001511471244IPR003340B3 DNA binding domain
PROSITE profilePS5086310.16511481244IPR003340B3 DNA binding domain
PfamPF023622.9E-1011591240IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-1712611364IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.16712651362IPR003340B3 DNA binding domain
CDDcd100174.14E-1312671360No hitNo description
Gene3DG3DSA:2.40.330.103.1E-1612681364IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-712681362IPR003340B3 DNA binding domain
PfamPF023625.1E-1112771352IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1714801585IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-2014811581IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-1714851581No hitNo description
PROSITE profilePS5086313.15514871586IPR003340B3 DNA binding domain
SMARTSM010196.0E-1014871587IPR003340B3 DNA binding domain
PfamPF023623.7E-1214871583IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1594 aa     Download sequence    Send to blast
MRKSFTTCKE CIFYHYWNHM GDQKRSFINV MIGDFVPNAL HEVHSKLDVG LIWLFLQAVP  60
TKFANIIRGQ ISEVVKLEVP NGKTYDVQVA KEQNELVLRS GWGAFARDYE LKQCDILVFT  120
YSGSSRFKVR IFNPSGCEKE LSCVMMNSTP CGHEGSMPYH DNHVQSPSER SSQHATVLPP  180
VLLDKPVTIP KMFAKNVQGQ ISGVAKLEVP DGRTYDVEIA KEHNELVFRS GWEVFASAYE  240
LEQGDILVFA YSGNSHFKVQ IFNPSNCEKE LSCVMMNRSI SDDNHRQSPS WERMNKSGTT  300
CMDCITNHYW LHMDDRERYF FKVMMSVSDI KDELAIPKKF TANVRGKIPE QVRLEVSDGK  360
MYNVQVTEEQ DELVLRSGWA NFASTYQLKH GDLLVFIHSG HSHFKVLIFD PSYTEKEFSC  420
VVTDSTSHVH ERSISHDNHL QSPRSVILGK NYSLCSSRKR SRMNPADYPS QRPDVPSSED  480
IKDPMSSGGL QKSKKSCYVL PMLYSMTSAQ EAEVLALEKK IQPQIPLYIT AMDISVASGS  540
LVFSKDYAVR YLLDQNRTIK LCQSGGSKTW DISLDMDTDD LYALSTGWLD FFRGNLLQEG  600
DICVFEASKS KRGVALTFHP FKESHCPKSS EYTLSTKSPT RRVPKRDYFA TNLTNLTDQQ  660
ERKCFSVKYA SKYLPHEDQN MRLRLPETKY KCKAALRVDT STNLHKLLKG WGKFVNDNKL  720
EVHDICLFQL MKNKKKLTMT VHIIRKGECS GSLCCRCCGM EKSHRVCKNC VANHYWLHMD  780
NHGKSFIKVM ITDFKNGVTI PAKFARNFGG QMSGTVKLET RNGKTYEVQV AKELNNLVLR  840
SGWERFASAY ELEKGDILVF IQSGNSHFKV WIYDPSACEK ELPCIITEQL PRVQQRSISH  900
DNHTRLKRNA KSAKLYVDSS GHTKETSEIN PASSPSWKPT ERVPFSEELD EPVDLANVQK  960
ATKSFYSLPR MCNLTSAQKA EVDALEKRIK PQIPFYITVI DKASATDGLL AISKDYAVSY  1020
LLDKNETIKL CHSGRSLTWD IGLDIDTDDQ YALSTGWLDF IRNNHLQEGD ICVFEASKNK  1080
RGVALIFHPL KQSHHPKPPG CVPSTKFPRH GVSKPNYIVS RFTTLSGQLK IKVEAKVQAI  1140
QSEVPIFVAV MRESFIRGRS RYMCFSAKYA AKYLPRENNK IMRLRLPKKS YKYKAVFKIN  1200
NKVHKLGGGW GKFVDDNKLK LGDICLFQLM KDKKKLTMMV MGEKGCESCR KWQEHYYKEH  1260
MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL KSPSGETWRV GIEKVADELI  1320
LMSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD ASGCEKVSCF FTGKKNSYMC  1380
KNFNSIGGQI AGKYLSSDSE DTSTPSVLIG SPHKASTSKK LSGKTKTNPR KEPEDPNCSH  1440
WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL QPGNPVFVAV LQTAHVRRRN  1500
ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN TTRGFNCHRW IKFIRENRLR  1560
EGNVCIFELM KGARRPTMTV HVICKADNRF VLLS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0E0FDM50.0A0A0E0FDM5_9ORYZ; Uncharacterized protein
STRINGOMERI12G12100.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-27B3 family protein