PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12400.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 324aa    MW: 34070.7 Da    PI: 6.4492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-062132501254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OMERI12G12400.1 213 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 250
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.744201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-12211269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-6211255No hitNo description
SMARTSM003530.0061212256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-9215259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAEEHEWWNS PCSARTGDDD EAACSTAPAD GGDESAVGST PMSFGHGGQP SLSDAAAASS  60
FLLAGQHMGY WTQDFMGGRA AAAATASFDT LLQLQLQGGD AASRRLLLGD HAAAPPRHLV  120
VPGAPYGGGG GDATTGAPPQ GVSPTPYEAA DNLQQQQSFP GGHHVVSNTE RLHDHHQDAG  180
SPSPATRSSP GSPAAAKKPR IEAPSPMPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL  240
HEAIEYIKFL HDQVASLSSP YLRCGRPMQL QHQQGSHKVN GNCEGKQLDL RSRGLCLVPV  300
ASTYTVASET ATEFWHPTFG GTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378340.0CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638165.10.0transcription factor bHLH68 isoform X2
TrEMBLA0A0E0FDR00.0A0A0E0FDR0_9ORYZ; Uncharacterized protein
STRINGOMERI12G12340.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.14e-49bHLH family protein