PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI12G12420.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 117aa MW: 12866.6 Da PI: 11.1393

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI12G12420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	87	113	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 ahn E+rRR++i ++f +L++l+P + OMERI12G12420.1 87 AHNLTEKRRRSKITERFRTLQRLVPGC 113 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.05E-8	82	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.566	83	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.58E-6	87	116	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.9E-10	87	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	87	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MAAWLYPIVG GHQVAAGGWL SPEARDDRRA APPAPEKKQM ENMPAVASPT TTMNKDEPRD 60 DSGERKKKKA SSAAAGKASR HRHAAGAHNL TEKRRRSKIT ERFRTLQRLV PGCDNKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	6e-73	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619315.1	4e-59	transcription factor APG
TrEMBL	A0A0E0FDR5	3e-80	A0A0E0FDR5_9ORYZ; Uncharacterized protein
STRING	OMERI12G12360.1	5e-81	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6283	24	52