PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12480.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 367aa    MW: 38736.9 Da    PI: 10.3213
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27299352355
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYe++
  OMERI12G12480.1 299 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEEN 352
                      9*************************988**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-18250295IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-29285352IPR003657WRKY domain
PROSITE profilePS5081126.36292358IPR003657WRKY domain
SuperFamilySSF1182903.66E-23295351IPR003657WRKY domain
SMARTSM007741.8E-30297357IPR003657WRKY domain
PfamPF031066.8E-23299351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG  60
GGGRGGGGGH ARGRMAGRSR PSAVLREKGF LESSGGGGQL GMMMSSAATP STSSATHLRN  120
RIGGGGGVPP DSLRGLDLVS SSSKGGAHQF DPPKLVQPLS VQFQFGATAH RYPFQQHQHQ  180
QKLQAEMFKR SNSGISLKFD SPSATGTMSS AFMSSLSMDG SVASLEGKPP FHLIGGPVAS  240
DPVNAHHAPK RRCTGRGEDG SGKCATTGRC HCSKRRKLRI KRSIKVPAIS NKIADIPPDE  300
YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERCVD DPAMLIVTYE ENAEAPSFCS  360
GMVGPVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-17285350266WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16168GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706480.0AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620342.10.0protein WRKY1
SwissprotQ32SG43e-83WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0FDS10.0A0A0E0FDS1_9ORYZ; Uncharacterized protein
STRINGOMERI12G12420.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-66WRKY DNA-binding protein 21