PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI12G12480.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 442aa MW: 46588.6 Da PI: 10.39

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI12G12480.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	3e-31	376	433	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ OMERI12G12480.3 376 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 433 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.7E-18	327	372	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.0E-33	362	433	IPR003657	WRKY domain
PROSITE profile	PS50811	30.148	369	432	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-27	372	433	IPR003657	WRKY domain
SMART	SM00774	4.4E-38	374	434	IPR003657	WRKY domain
Pfam	PF03106	6.7E-27	376	432	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MGRGAPPVVA AATMGRRSGR RNQGRPPSIA VGFDGWLLDE RETLDPPGFP VEFLASEELR 60 ESEASLAGLA AAAAAAAMEE EVEAANRAAV ESCHRVLALL SQQQDPALLR SIASETGEAC 120 AKFRKVVSLL GNGGGGGGGG RGGGGGHARG RMAGRSRPSA VLREKGFLES SGGGGQLGMM 180 MSSAATPSTS SATHLRNRIG GGGGVPPDSL RGLDLVSSSS KGGAHQFDPP KLVQPLSVQF 240 QFGATAHRYP FQQHQHQQKL QAEMFKRSNS GISLKFDSPS ATGTMSSAFM SSLSMDGSVA 300 SLEGKPPFHL IGGPVASDPV NAHHAPKRRC TGRGEDGSGK CATTGRCHCS KRRKLRIKRS 360 IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDDPA 420 MLIVTYEGEH NHTRLPTQSA QT

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MGRGAPPVVA AATMGRRSGR RNQGRPPSIA VGFDGWLLDE RETLDPPGFP VEFLASEELR  60
ESEASLAGLA AAAAAAAMEE EVEAANRAAV ESCHRVLALL SQQQDPALLR SIASETGEAC  120
AKFRKVVSLL GNGGGGGGGG RGGGGGHARG RMAGRSRPSA VLREKGFLES SGGGGQLGMM  180
MSSAATPSTS SATHLRNRIG GGGGVPPDSL RGLDLVSSSS KGGAHQFDPP KLVQPLSVQF  240
QFGATAHRYP FQQHQHQQKL QAEMFKRSNS GISLKFDSPS ATGTMSSAFM SSLSMDGSVA  300
SLEGKPPFHL IGGPVASDPV NAHHAPKRRC TGRGEDGSGK CATTGRCHCS KRRKLRIKRS  360
IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDDPA  420
MLIVTYEGEH NHTRLPTQSA QT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	367	436	7	75	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	145	GGRGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070648	0.0	AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620342.1	0.0	protein WRKY1
Swissprot	Q93WU6	5e-91	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0E0FDS3	0.0	A0A0E0FDS3_9ORYZ; Uncharacterized protein
STRING	OMERI12G12420.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	4e-72	WRKY DNA-binding protein 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]