PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12740.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 197aa    MW: 21370.2 Da    PI: 7.623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-152474255
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++G++++k +grW AeIrd    +  k  r ++g+f+taeeAa a++a +++l+g
  OMERI12G12740.1 24 RFHGIHRRK-SGRWSAEIRD----NmiKGSRSWVGTFDTAEEAAWAYDAVARRLYG 74
                     689***999.7*********....77455************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.3E-262488IPR001471AP2/ERF domain
PfamPF008478.3E-102474IPR001471AP2/ERF domain
PROSITE profilePS5103219.2962482IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-202483IPR016177DNA-binding domain
CDDcd000187.67E-202481No hitNo description
Gene3DG3DSA:3.30.730.106.0E-252482IPR001471AP2/ERF domain
PRINTSPR003671.3E-52536IPR001471AP2/ERF domain
PRINTSPR003671.3E-54864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEEVEYRSDK GGRRRPAASK KQHRFHGIHR RKSGRWSAEI RDNMIKGSRS WVGTFDTAEE  60
AAWAYDAVAR RLYGPNARTN FPLPPPPPVA PLLPAPAVAN KKMNSKRKKP AVAAEMVGGP  120
AGGEPAAGEM APVLLGNALE ATNGWEFEPY SCMGLVVGGA VYNYADEPEP ADDELQLLHL  180
HGGAMVDFAA DGCLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12982272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5104790.0AB510479.1 Oryza sativa Indica Group Snorkel 2 gene for Ethylene response factor, complete cds, cultivar: C9285.
GenBankAB5104810.0AB510481.1 Oryza sativa Indica Group Snorkel 2 gene for Ethylene response factor, complete cds, cultivar: Bhadua.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664718.21e-34PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLA0A0E0FDW41e-142A0A0E0FDW4_9ORYZ; Uncharacterized protein
STRINGOMERI12G12760.11e-136(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.19e-11ERF family protein