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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMERI12G12770.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 136aa MW: 15566.6 Da PI: 6.2473 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 38.3 | 4.5e-12 | 76 | 135 | 1 | 62 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62
+fY+ YA++vGFsvr+ ++kk ng + ++f C +eg+re++ +k+ ++ r+ + t+C
OMERI12G12770.1 76 EFYEYYAHTVGFSVRIGQHKKV--NGLVLYKRFLCANEGFREDKVDKDLDSGRNYCCQPTKC 135
6*****************9998..9******************9998666666666666666 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 2.7E-9 | 76 | 127 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 136 aa Download sequence Send to blast |
MFIESEASMG RRLEFNELHS DAESVTPSNP RQLSQYATPQ KSTSIPYCGI CFIPDCDEAI 60 KPNKGMIFDD LESAKEFYEY YAHTVGFSVR IGQHKKVNGL VLYKRFLCAN EGFREDKVDK 120 DLDSGRNYCC QPTKCR |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015640678.1 | 2e-48 | protein FAR1-RELATED SEQUENCE 5 | ||||
| TrEMBL | A0A0E0FDW7 | 4e-98 | A0A0E0FDW7_9ORYZ; Uncharacterized protein | ||||
| STRING | OMERI12G12740.1 | 7e-99 | (Oryza meridionalis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP15006 | 9 | 15 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G06250.1 | 2e-10 | FAR1-related sequence 7 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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