PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI12G12970.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 991aa MW: 107797 Da PI: 8.2209

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI12G12970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.9	1.3e-15	458	497	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + OMERI12G12970.1 458 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 497 689**********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.1E-15	457	498	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.685	458	550	IPR005172	CRC domain
Pfam	PF03638	1.1E-11	460	495	IPR005172	CRC domain
Gene3D	G3DSA:3.10.110.10	1.8E-32	859	990	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
SuperFamily	SSF54495	9.18E-34	859	991	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
PROSITE profile	PS50127	16.714	861	970	IPR000608	Ubiquitin-conjugating enzyme E2
SMART	SM00212	1.9E-5	861	990	No hit	No description
Pfam	PF00179	7.2E-13	888	976	IPR000608	Ubiquitin-conjugating enzyme E2

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence Send to blast
MDTPDRPPRA AAAAAATAAV EDSPVFNFIN SLSPIPPPKP SDSAHNVQLF KSSDLAPVSS 60 IFASPHVNPA KESKLPIRED SVQLSRESHS PNSVRTRTGA TSSIRMIRCK NIVSENCSIT 120 CYLNDSTSSK ASEPIQLCGG SAESDTNQNT DGKKDPTTEQ DRTDIEFVLL DQSGPEKMDS 180 SQSGNNLCEN QLSEQHKDEL GSFDGGYMIA HQPHSDMLRL APPFESETQL VNETLQTDNV 240 YCESLLTDGP SGSYTQNSAP DPHLYWAGAV EGCATDYTPQ MLPGACQSQL VPNDQINNKL 300 NEPSDYMPMD HNVSSQNLRG MRRRCLFNEK SGAANKGAKN TSARHSTNST TPRRKISSSD 360 NNLKTLRTPP CALPGIGLHL NALATVPKDK MVPHNDIQSS LNQASNVLSA VGSSPPTVDP 420 HTVNDDSSQT AVVAYVGESS QGSPKKKRHK FDNGDGTSCK RCSCKKSKCL KLYCECFHAG 480 VFCSEPCSCQ GCLNKPSNME TVLSTREQIE SRNPLAFAPK VIRTEPGQEL AGGVGCSVSC 540 RCEGCKNAFG RREGVALLGI EEAKRGCEEK DGGVKEETTD NDKQLVIYQD SINLTPAESV 600 LATPSVVDYR PLVALPPLSS KKPRSSTKLG GYSSRLEGRL KSDILLSPFE SYAEMMLGDG 660 TSNVLKGESS PQTSVKVVSP NKKRVSPPRI GTGLSPICKS GRKLILKSIP SFPSLGGDIT 720 NEDPNTKDQI ANISVCIRET LAQSSFKNSY RACSRTGLGP TQPTSENALL TTCLLPARLA 780 SSRLWGSARL GSSSPPLLWL ASSPRTHTPP KGNGSEPLLL RRRRRRPHAR PPLRPRVVVA 840 KPAPPPALSW DGVEWRSIGS RRLLEELERG EKGIGDGSVS YGMDDADDIY MRSWTGTIIG 900 PHNTVHEGRI YQLKLFCDKD YPDRPPTVKF HSRINMTCVN PENGLVDQRK FSLLSNWRRE 960 YTMEAILTQL KKEMAASHNR KLVQPPEGTI F

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence Send to blast

MDTPDRPPRA AAAAAATAAV EDSPVFNFIN SLSPIPPPKP SDSAHNVQLF KSSDLAPVSS  60
IFASPHVNPA KESKLPIRED SVQLSRESHS PNSVRTRTGA TSSIRMIRCK NIVSENCSIT  120
CYLNDSTSSK ASEPIQLCGG SAESDTNQNT DGKKDPTTEQ DRTDIEFVLL DQSGPEKMDS  180
SQSGNNLCEN QLSEQHKDEL GSFDGGYMIA HQPHSDMLRL APPFESETQL VNETLQTDNV  240
YCESLLTDGP SGSYTQNSAP DPHLYWAGAV EGCATDYTPQ MLPGACQSQL VPNDQINNKL  300
NEPSDYMPMD HNVSSQNLRG MRRRCLFNEK SGAANKGAKN TSARHSTNST TPRRKISSSD  360
NNLKTLRTPP CALPGIGLHL NALATVPKDK MVPHNDIQSS LNQASNVLSA VGSSPPTVDP  420
HTVNDDSSQT AVVAYVGESS QGSPKKKRHK FDNGDGTSCK RCSCKKSKCL KLYCECFHAG  480
VFCSEPCSCQ GCLNKPSNME TVLSTREQIE SRNPLAFAPK VIRTEPGQEL AGGVGCSVSC  540
RCEGCKNAFG RREGVALLGI EEAKRGCEEK DGGVKEETTD NDKQLVIYQD SINLTPAESV  600
LATPSVVDYR PLVALPPLSS KKPRSSTKLG GYSSRLEGRL KSDILLSPFE SYAEMMLGDG  660
TSNVLKGESS PQTSVKVVSP NKKRVSPPRI GTGLSPICKS GRKLILKSIP SFPSLGGDIT  720
NEDPNTKDQI ANISVCIRET LAQSSFKNSY RACSRTGLGP TQPTSENALL TTCLLPARLA  780
SSRLWGSARL GSSSPPLLWL ASSPRTHTPP KGNGSEPLLL RRRRRRPHAR PPLRPRVVVA  840
KPAPPPALSW DGVEWRSIGS RRLLEELERG EKGIGDGSVS YGMDDADDIY MRSWTGTIIG  900
PHNTVHEGRI YQLKLFCDKD YPDRPPTVKF HSRINMTCVN PENGLVDQRK FSLLSNWRRE  960
YTMEAILTQL KKEMAASHNR KLVQPPEGTI F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jat_B	4e-41	862	991	10	138	Ubiquitin-Conjugating Enzyme Variant Mms2
2gmi_B	3e-41	862	991	9	137	Ubiquitin-conjugating enzyme variant MMS2
5ojw_B	3e-41	862	991	9	137	Ubiquitin-conjugating enzyme variant MMS2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	819	826	LRRRRRRP
2	820	825	RRRRRR
3	823	830	RRRPHARP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073942	0.0	AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620275.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0FDY6	0.0	A0A0E0FDY6_9ORYZ; Uncharacterized protein
STRING	OMERI12G12890.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12746	26	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	4e-47	Tesmin/TSO1-like CXC domain-containing protein