PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12970.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 886aa    MW: 96716 Da    PI: 8.1622
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12970.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.11.1e-15353392241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk +
  OMERI12G12970.2 353 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 392
                      689**********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-15352393IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163417.685353445IPR005172CRC domain
PfamPF036389.7E-12355390IPR005172CRC domain
SuperFamilySSF544957.57E-34754886IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.101.6E-32754885IPR016135Ubiquitin-conjugating enzyme/RWD-like
PROSITE profilePS5012716.714756865IPR000608Ubiquitin-conjugating enzyme E2
SMARTSM002121.9E-5756885No hitNo description
PfamPF001796.2E-13783871IPR000608Ubiquitin-conjugating enzyme E2
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MIRCKNIVSE NCSITCYLND STSSKASEPI QLCGGSAESD TNQNTDGKKD PTTEQDRTDI  60
EFVLLDQSGP EKMDSSQSGN NLCENQLSEQ HKDELGSFDG GYMIAHQPHS DMLRLAPPFE  120
SETQLVNETL QTDNVYCESL LTDGPSGSYT QNSAPDPHLY WAGAVEGCAT DYTPQMLPGA  180
CQSQLVPNDQ INNKLNEPSD YMPMDHNVSS QNLRGMRRRC LFNEKSGAAN KGAKNTSARH  240
STNSTTPRRK ISSSDNNLKT LRTPPCALPG IGLHLNALAT VPKDKMVPHN DIQSSLNQAS  300
NVLSAVGSSP PTVDPHTVND DSSQTAVVAY VGESSQGSPK KKRHKFDNGD GTSCKRCSCK  360
KSKCLKLYCE CFHAGVFCSE PCSCQGCLNK PSNMETVLST REQIESRNPL AFAPKVIRTE  420
PGQELAGGVG CSVSCRCEGC KNAFGRREGV ALLGIEEAKR GCEEKDGGVK EETTDNDKQL  480
VIYQDSINLT PAESVLATPS VVDYRPLVAL PPLSSKKPRS STKLGGYSSR LEGRLKSDIL  540
LSPFESYAEM MLGDGTSNVL KGESSPQTSV KVVSPNKKRV SPPRIGTGLS PICKSGRKLI  600
LKSIPSFPSL GGDITNEDPN TKDQIANISV CIRETLAQSS FKNSYRACSR TGLGPTQPTS  660
ENALLTTCLL PARLASSRLW GSARLGSSSP PLLWLASSPR THTPPKGNGS EPLLLRRRRR  720
RPHARPPLRP RVVVAKPAPP PALSWDGVEW RSIGSRRLLE ELERGEKGIG DGSVSYGMDD  780
ADDIYMRSWT GTIIGPHNTV HEGRIYQLKL FCDKDYPDRP PTVKFHSRIN MTCVNPENGL  840
VDQRKFSLLS NWRREYTMEA ILTQLKKEMA ASHNRKLVQP PEGTIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gmi_B3e-417578869137Ubiquitin-conjugating enzyme variant MMS2
5ojw_B3e-417578869137Ubiquitin-conjugating enzyme variant MMS2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714721LRRRRRRP
2715720RRRRRR
3718725RRRPHARP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739420.0AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620275.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0E0FDY60.0A0A0E0FDY6_9ORYZ; Uncharacterized protein
STRINGOMERI12G12890.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-47Tesmin/TSO1-like CXC domain-containing protein