PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G13160.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 178aa    MW: 18626.7 Da    PI: 8.3928
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G13160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.45.6e-14731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr++L YPrGApsV+Ca+C++V
  OMERI12G13160.1  7 CHGCRNILLYPRGAPSVCCAVCHAV 31
                     ************************9 PP
2zf-LSD148.31.6e-157498125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y+r+A+sVRC++CdtV
  OMERI12G13160.1 74 CGGCRTLLMYTRNATSVRCSCCDTV 98
                     ************************9 PP
3zf-LSD150.82.6e-16112136125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C+t+L+YP+GApsV+Ca+C+++
  OMERI12G13160.1 112 CGQCQTVLMYPYGAPSVKCAICNFI 136
                      ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.0E-12431IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-1571101IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-127498IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.6E-11109137IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-14112136IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGC KHSPEFAGSA EGLGRPDFIR  60
IGGFTGMDIA HLICGGCRTL LMYTRNATSV RCSCCDTVNL VRPVSSIAHL NCGQCQTVLM  120
YPYGAPSVKC AICNFITNTG PTTQSQNVTV VVENPMTVDA KGKLVSNVVV GVTTGGKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118371e-118AK111837.1 Oryza sativa Japonica Group cDNA clone:J023139G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620418.11e-94protein LOL2
SwissprotQ2QMB39e-96LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0E0FE181e-126A0A0E0FE18_9ORYZ; Uncharacterized protein
STRINGOMERI12G13090.15e-99(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-44lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]