PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G13460.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 213aa    MW: 23445.6 Da    PI: 9.042
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G13460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY232.97.8e-7261835170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee............lleelkveeenlksnv 86 
                        +eqvCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+  ++  +a ++ +++  ++              ++ +  e  ++   
  OMERI12G13460.1   6 APAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQSliilqesglsgcFRDQSGYPEFGFSAAS 99 
                      5689**********************************************99999876566655556876677766655555666666666666 PP

            YABBY  87 ekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      ++++      ++ ++s +++++  ++    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  OMERI12G13460.1 100 SSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 183
                      666666666667777888888877777789****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.2E-747183IPR006780YABBY protein
SuperFamilySSF470953.14E-8128177IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-5130177IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSAQIAPAEQ VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMHSAPA  60
LQDHHHHHLQ SLIILQESGL SGCFRDQSGY PEFGFSAASS SSKLRLPPAA AAMVSYSQQN  120
QQLEQALHAR PPEKRQRVPS AYNRFIKEEI RRIKANNPDI SHREAFSTAA KNWAHYPNIH  180
FGLSPGHEGG KKLVDVDPIP TAPSSKKIQG FYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740180.0AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds.
GenBankAK1049180.0AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence.
GenBankCT8291390.0CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence.
GenBankFJ9401950.0FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618575.11e-142protein YABBY 6
SwissprotQ2QM171e-143YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0E0FE711e-157A0A0E0FE71_9ORYZ; Uncharacterized protein
STRINGOPUNC12G17340.11e-144(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-58YABBY family protein