PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G14790.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 172aa    MW: 18239.7 Da    PI: 11.641
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G14790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.6e-1161110150
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      e++++r rr+++NRe+ArrsR+RK+  ++eL+ k+++L a  ++L+ +l 
  OMERI12G14790.1  61 EERRRRLRRRISNRESARRSRARKQRHLDELRAKAAALRAAGRDLAARLR 110
                      68899***********************************9999998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.1E-757110No hitNo description
SMARTSM003384.1E-759125IPR004827Basic-leucine zipper domain
PfamPF001702.1E-761109IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4563109IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.58E-765110No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDMAGLPFPS DSDTALEAFL ADIGFGAPCP ESAPAPSPSH PDTTAAATDE PVMAGDDQAD  60
EERRRRLRRR ISNRESARRS RARKQRHLDE LRAKAAALRA AGRDLAARLR GARARAALVA  120
LANARLRDEA GALARRLAAA RRAIALRQLY SAAFAAAGGG GFEMQALASL IA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784RRSRARKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619047.14e-54ocs element-binding factor 1
TrEMBLA0A0E0FER11e-110A0A0E0FER1_9ORYZ; Uncharacterized protein
STRINGOMERI12G14890.11e-111(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151251919