PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G00560.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 228aa MW: 24600.7 Da PI: 9.8372

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G00560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6e-09	40	108	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P a+ + +++ ++ + Le+A YIk+L+ ONIVA01G00560.1 40 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 108 56899*******************555**********76666666**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.528	36	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-9	38	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-11	38	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-6	40	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0032	42	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MKSRKNSTTS TKAAGSCHTS SSGGGGGGGN CYSSSSSKME RKDVEKNRRL HMKGLCLKLS 60 SLIPAAAPRR HHHHYSTSSS SSPPSSTKEA VTQLDHLEQA AAYIKQLKGR IDELKKRKQQ 120 AAALTTSTSN GGGGGMPVVE VRCQDGTLDV VVVSEAIGEE RERERERAVR LHEVIGVLEE 180 EGAEVVNASF SVVGDKIFYT LHSQALCSRI GLDASRVSHR LRNLLLQY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109432	0.0	AK109432.2 Oryza sativa Japonica Group cDNA clone:006-308-A12, full insert sequence.
GenBank	CT834729	0.0	CT834729.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117C11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622948.1	1e-124	transcription factor bHLH168
TrEMBL	A0A0E0FF39	1e-165	A0A0E0FF39_ORYNI; Uncharacterized protein
STRING	ONIVA01G00560.1	1e-166	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	7e-19	bHLH family protein