PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G02970.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 314aa    MW: 34967.1 Da    PI: 8.6476
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G02970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.3e-1362110155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  ONIVA01G02970.1  62 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 110
                      78****9888.8*********......44*************************98 PP
2B391.27.7e-29175268185
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+++
  ONIVA01G02970.1 175 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRS 268
                      89*****************************999855667999************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.93E-1362116No hitNo description
PfamPF008472.7E-862110IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-1662116IPR016177DNA-binding domain
SMARTSM003809.2E-2463124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-1963116IPR001471AP2/ERF domain
PROSITE profilePS5103221.07463118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-37171288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-29172284IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-28173268No hitNo description
PfamPF023627.6E-26175269IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394175284IPR003340B3 DNA binding domain
SMARTSM010197.1E-20175285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEQEAAMVVF SCNSGSDGSS STTDSKQEEE ELAAMEEDEL IHVVQAAELR LPSSTTATRP  60
SSRYKGVVPQ PNGRWGAQIY ERHARVWLGT FPDEEAAARA YDVAALRFRG RDAVTNRAPA  120
AEGASAGELA FLAAHSKAEV VDMLRKHTYD DELQQGLRRG SRAQPTPRWA REPLFEKAVT  180
PSDVGKLNRL VVPKQQAERH FPFPLRRHSS DAAGKGVLLN FEDGDGKVWR FRYSYWNSSQ  240
SYVLTKGWSR FVREKGLRPG DTVAFSRSAA AWGTEKHLLI DCKKMERNNL ATVDDDARVV  300
VKLFGVDIAG DKTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4817229011122DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878463.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS70.0Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0E0FG190.0A0A0E0FG19_ORYNI; Uncharacterized protein
STRINGONIVA01G02970.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-96related to ABI3/VP1 2