PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G05440.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 602aa    MW: 66202.9 Da    PI: 7.4959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G05440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-065681126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+ C +f  +G C + d C+FaHg
  ONIVA01G05440.1 56 YKTRVCETFVTSGRCMFEDGCTFAHG 81
                     9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-145087IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-95487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.455583IPR000571Zinc finger, CCCH-type
SMARTSM003560.00165582IPR000571Zinc finger, CCCH-type
SMARTSM003560.42137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206137165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4140162IPR000571Zinc finger, CCCH-type
SMARTSM007024.7E-19376555IPR006620Prolyl 4-hydroxylase, alpha subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAGRGGMEWE VGRRRDSEDV IVLSPGPPAR RRPPPVKAVE PDPGGFAYEP PEKLFYKTRV  60
CETFVTSGRC MFEDGCTFAH GDEELRPSLT ACAGGWRKPS PSLAAPPVAV AVAPTPPPAQ  120
VVHELLARGS GSGGGHRAIT KVCFEFRDKG TCYFGETCAF PHVSAAEIRQ GSRLSSMSSS  180
SWEMPARRSV AVTVPRTFVS VPPVAPPPPH YRVNNNSSSS SRYNAASMAA AAPPAASDAN  240
LVAQQPPPEQ GGRKMTRLEM LSLKKMTGIY GDWLEGAIEH YLNAGVVSIK LWMNRFDYRG  300
LMQPFDGICE IPIIKLRPYQ LNYYNQEAVG KGQHRWGKWF DLSIAQEKLV NSTGGSTASS  360
SHLVYPSKSK RLSWHPRIFL YEGFLSDMEC DHLVSTGRGN MDSSLAFTDG DRNSSYNNIE  420
DIVVSKIEDR ISLWSFLPKE NGENIQVLKY GVNRRGSIKE EPKSSTGGHW LATILIYLSD  480
VKQGGETVFP RSEMKDAQAK EGAPSQCSGY AVRPAKGNAL LLFNLRPDGE IDKDSQYEEC  540
PVLEGEKWLA IKHIHLRKLD SPKSSLASED ECTDEDDRCV SWAASGLSNL ILSAYNHEKI  600
IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jig_A5e-3237155615217PROLYL-4 HYDROXYLASE
2jig_B5e-3237155615217PROLYL-4 HYDROXYLASE
2jij_A6e-3237155624226PROLYL-4 HYDROXYLASE
2jij_B6e-3237155624226PROLYL-4 HYDROXYLASE
2jij_C6e-3237155624226PROLYL-4 HYDROXYLASE
2v4a_A6e-3237155624226PROLYL-4 HYDROXYLASE
2v4a_B6e-3237155624226PROLYL-4 HYDROXYLASE
2v4a_C6e-3237155624226PROLYL-4 HYDROXYLASE
2v4a_D6e-3237155624226PROLYL-4 HYDROXYLASE
3gze_A4e-3237155616218Predicted protein
3gze_B4e-3237155616218Predicted protein
3gze_C4e-3237155616218Predicted protein
3gze_D4e-3237155616218Predicted protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076620.0AK107662.1 Oryza sativa Japonica Group cDNA clone:002-131-G11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FGZ70.0A0A0E0FGZ7_ORYNI; Uncharacterized protein
STRINGONIVA01G05440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1354177