PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G06130.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 238aa    MW: 25123.7 Da    PI: 4.1791
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G06130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.41.7e-1411519917100
            NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprde 100
                      ++ +lPl r+k+i+++d d+k+++ ea  l++ a elf+  l+  +   a    rr+++   + aa  +   + dfl+d  p  e
  ONIVA01G06130.1 115 QRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFVGSLAAGAHRAASRRGRRAVRAVHVRAAAREhRPTADFLLDCLPAAE 199
                      5668***********************************************************98876515699*****999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-14115210IPR009072Histone-fold
PfamPF008082.3E-13119180IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-17119196IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAAAAVADEV TEAMEQVEGE REEADAVADE AAEVMEQAEG EREEAIDAVA GEAGEVMKEV  60
VEGEREEANA MADEADEAME PEGEREEEAD AVADEATEPM EQVEGEGEDG DAATQRPALP  120
LGRVKRIIRV DRDIKKVTNE AALLIAAATE LFVGSLAAGA HRAASRRGRR AVRAVHVRAA  180
AREHRPTADF LLDCLPAAEE AAPARAAAAG PSRGGGRGEA KPLPCGTRRI DAFFQKTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024840.0AP002484.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0489A01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879187.11e-156tropomyosin
TrEMBLA0A0E0FH901e-157A0A0E0FH90_ORYNI; Uncharacterized protein
STRINGONIVA01G06130.11e-158(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628