PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07020.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 518aa    MW: 55665.4 Da    PI: 9.1214
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07020.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-067496123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++Cgk F r  nL+ H r H
  ONIVA01G07020.3 74 YVCEICGKGFQRDQNLQLHRRGH 96
                     9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-77396No hitNo description
PROSITE profilePS5015711.8017496IPR007087Zinc finger, C2H2
SMARTSM003550.00697496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-67496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035544116146IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.09E-7146171No hitNo description
SMARTSM0035528151172IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-4171202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.84E-5177226No hitNo description
SMARTSM00355160182202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MMLKDLAEIQ QQQLLAAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV  60
IALSPRTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE  120
AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KHFCRKHGEK  180
KWKCDRCGKR YAVHSDWKAH SKVCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARA  240
VTAAAAVAGQ QQHGGGMLFS QVADVLDHQA AMAMGGHGLM QELCLKREQQ QQQQQFAPSW  300
LTAQQQQQQL EAMAGAGNPA AMYGSARLDQ EFIGSSTPES GGAQQAGLSF GFSSTSSAPP  360
HPAASSAHMS ATALLQKAAQ MGATLSRPSS HAHMAPVAAA STHNSSSSAA TTNAPPPPPT  420
SNVSSTCVGA GGYGLAFEAS HFIAADESSR GARSDRDTGN GVAGAGNDGL TRDFLGLRAF  480
SHGNIMSMAG FDPCMSTTSA SSAAPYDHHH HSNKPWHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32178239364Zinc finger protein JACKDAW
5b3h_F2e-32178239364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100113KLKQRNPKEVVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056630.0AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.10.0protein indeterminate-domain 7
TrEMBLA0A0E0FHK20.0A0A0E0FHK2_ORYNI; Uncharacterized protein
STRINGONIVA01G07020.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-97indeterminate(ID)-domain 11