PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 219aa    MW: 23564.7 Da    PI: 4.4548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-1396140554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + ++Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +L
  ONIVA01G07150.1  96 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKL 140
                      6789*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19391140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-1395145No hitNo description
SuperFamilySSF474591.57E-1595161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1096140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1397146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1498158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEAAADMGVL LDLYWHTPHI FDLAVADSLL MDGFGSGMYG PAAAPATPAM VEKEYDESLS  60
ELYAYTSQSR YADSSSPDVV NLCSTAVASA AASSKNIAME RDRRKRLNEK LFALRAVVPK  120
ITKMDKASIV RDAIAHIEKL HEEERQLLDE ISVLQSAAAV AATVVEDVDD SGVTMPSMKK  180
LRSTPPLDGG GGALRVASSP PLQILEVETK ETEDFYGPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-158CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.11e-123transcription factor bHLH35
TrEMBLA0A0E0FHL91e-157A0A0E0FHL9_ORYNI; Uncharacterized protein
STRINGONIVA01G07150.11e-158(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-20bHLH family protein