PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G08000.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 227aa MW: 24475.3 Da PI: 6.419

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G08000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.9	4.6e-17	46	94	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g ONIVA01G08000.1 46 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 94 9**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	8.1E-31	45	103	IPR001471	AP2/ERF domain
SMART	SM00380	6.4E-35	45	108	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.8	45	102	IPR001471	AP2/ERF domain
Pfam	PF00847	6.7E-12	45	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-9	46	57	IPR001471	AP2/ERF domain
CDD	cd00018	2.01E-29	46	104	No hit	No description
SuperFamily	SSF54171	2.75E-20	46	103	IPR016177	DNA-binding domain
PRINTS	PR00367	2.8E-9	68	84	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAASEQSSES SSTASTSSCG KKQQVAGKRK REDVGGGGEQ AAAVSYRGVR MRAWGKWVSE 60 IREPRKKSRI WLGTFPCPEM AARAHDVAAL SIKGARAVLN FPDLAPALPR PASLAPRDVQ 120 AAAALAAVMH HHKHPSSSTS TSSPPAAPPP DEHHPRHEPQ QPESSREDDQ QQQPAAAAAA 180 QMAVAELVFD ELAPLWVEDV EFGTSDHCWT AYDALDPIGF QPLLWEY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	33	102	2	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644400.1	1e-119	ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	1e-43	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0E0FHZ1	1e-163	A0A0E0FHZ1_ORYNI; Uncharacterized protein
STRING	ONIVA01G08000.1	1e-164	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP159	35	354

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-31	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]