PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G09270.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 578aa    MW: 60011.5 Da    PI: 7.322
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G09270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.98.7e-35211311286
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaessss 80 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +                ++++s++ ++s ++
  ONIVA01G09270.1 211 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptaggagagnaAAPPSSSTHPDSAEN 304
                      79**************************************************************888888888888776555555553333333 PP

              TCP  81 sas.nss 86 
                      s++ ++ 
  ONIVA01G09270.1 305 SDDqAQA 311
                      3330222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-30211284IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257213271IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
METRPPAAPA KLSYGIRRGG WTRIGAATVA AGKKAAGDLD PRHHHHRVTH GGDGGGVGGG  60
GSGGQEEADE QQQQQHDHHR LLQLHHHQGV QQDQEPPPVP VFHLQPASVR QLSGSSAEYA  120
LLSPMGDAGG HSHHHQHGFQ PQLLSFGGVG HHHHLHQFTA QPQPPAASHT RGRGGGGEIV  180
PATTTPRSRG GGGGGGGEIV AVQGGHIVRS TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ  240
FYDVQDRLGY DRPSKAVDWL IKNAKDAIDK LDVLPAWQPT AGGAGAGNAA APPSSSTHPD  300
SAENSDDQAQ AITVAHTAFD FAGGGSGGTS FLPPSLDSDA IADTIKSFFP MGGTAGGEAS  360
SSTTAAQSSA MGFQSYTPDL LSRTGSQSQE LRLSLQSLPD PMFHHQQHRH GGGGNGTTQQ  420
ALFSGAANYS FGGGAMWATE QQAQNQRMLP WNVPDPGGGG GAAYLFNVSQ QAAHMQAAAA  480
LGGHQSQFFF QRGPLQSSNQ PSERGWPETV EADNQMSHHQ GGLSPSVSAA IGFAAPGIGF  540
SGFRLPARIQ GDEEHNGGGG GNGDKPPPPS SVSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-20218271154Putative transcription factor PCF6
5zkt_B1e-20218271154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031040.0AP003104.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634261.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A0E0FIF10.0A0A0E0FIF1_ORYNI; Uncharacterized protein
STRINGONIVA01G09270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-59TCP family protein