PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G10240.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 237aa    MW: 27018.2 Da    PI: 4.8784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G10240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-094374132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT +E  +l +++k++G ++Wk + +  g
  ONIVA01G10240.1 43 KGPWTSWENSILEKYIKKHGERNWKIVQKNTG 74
                     79************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-74172IPR009057Homeodomain-like
SuperFamilySSF466892.17E-64175IPR009057Homeodomain-like
PfamPF002491.5E-64374IPR001005SANT/Myb domain
CDDcd001673.86E-44574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MHRSGSDSDS DKAHWYMSNS DDESFVDKDK DCRRGTVALL LKKGPWTSWE NSILEKYIKK  60
HGERNWKIVQ KNTGLLSNIL DRRLASKDYD SIEDQRNRIE VAAEYEISLP VLKTTNNDIF  120
PSASIFANHG ISNGNLSALS TTDALQMELP LIQFDPNNQF IYSRAYATHL TNLALLNDQS  180
EELLNHIDVL NYVVMKEELS RGSLSPTINM PCEATAYSSE LPLCKGYREQ DLDFYTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886210.0D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881555.15e-99transcription factor GAMYB
TrEMBLA0A0E0FIS71e-176A0A0E0FIS7_ORYNI; Uncharacterized protein
STRINGONIVA01G10240.11e-177(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154081018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-11myb domain protein 101