PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G11810.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 306aa MW: 32353.4 Da PI: 8.4577

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G11810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.3	6.5e-23	40	86	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ ONIVA01G11810.1 40 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 86 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	23	108	IPR003035	RWP-RK domain
Pfam	PF02042	5.0E-21	41	86	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MASTAQPQQQ QEQQPVAAAA VPTPAPPASE AQPQKPTRVS LSYEEISKLF SLPIAEAASI 60 LGVCTSVLKR ICRSHGIVRW PYRKLVSGKS GDDTKNAERE KAKGLLEISK VAKQKALSAS 120 GLSTVSPGAF QGVAKSQQGS SKAGQVSPPG KQNVLGGSAI LSYGTQTKGI PTYMDDFKYG 180 FPSSGLSLQT MKWWGTDSHT ETTPAKDDNG EAPESANEAS KGMTDDELDW GADEAEAEAD 240 ADSAITTEPS AQLCSLRRKA VDDGRKLLTG KSCGGLELCR LNKRQKMALA QVFGASLPEQ 300 LRSKLG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058984	0.0	AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625714.1	0.0	uncharacterized protein LOC4326758
TrEMBL	A0A0E0FJE4	0.0	A0A0E0FJE4_ORYNI; Uncharacterized protein
STRING	ONIVA01G11810.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-10	RWP-RK domain-containing protein