PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G22710.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 526aa MW: 55899.3 Da PI: 7.9535

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G22710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H ONIVA01G22710.1 94 FVCEICGKGFQRDQNLQLHRRGH 116 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.1E-7	93	116	No hit	No description
SMART	SM00355	0.012	94	116	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-5	94	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	94	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	136	166	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.1E-7	166	191	No hit	No description
SMART	SM00355	160	171	191	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MFHHHLQQQQ QQQEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTAPP PPPPSSGNNG 60 NNSNKRKRSL PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW 120 KLKQRGSKEA VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY 180 AVHSDWKAHS KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGIPAAMAAP 240 GHHHHHQLLF SPPPVMAHHQ ELAALQEQQQ QQHHQDVMQS PHQHQQQLVQ QNCGYAVKPE 300 MAPWPTTMPY DHHHPLLQPL CNANAAATAQ SSATSAPPTT PQLPAAAAAA HLSATALLQK 360 AAQMGATIGG AGTGAAGAHY AHMASPAGAG APAGGSATFG LGLSCLNTHQ DGGGGGGNGL 420 IPAGMMGHLA RTASHGRSGE DVAGAGGGGG DGMTRDFLGL RAFSHRDILL AGFDSSCMGH 480 VNAAAGMAGY EPPPPHHGQP QHQHQQQQQQ QQGGSNEPWH GMGSHS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MFHHHLQQQQ QQQEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTAPP PPPPSSGNNG  60
NNSNKRKRSL PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW  120
KLKQRGSKEA VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY  180
AVHSDWKAHS KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGIPAAMAAP  240
GHHHHHQLLF SPPPVMAHHQ ELAALQEQQQ QQHHQDVMQS PHQHQQQLVQ QNCGYAVKPE  300
MAPWPTTMPY DHHHPLLQPL CNANAAATAQ SSATSAPPTT PQLPAAAAAA HLSATALLQK  360
AAQMGATIGG AGTGAAGAHY AHMASPAGAG APAGGSATFG LGLSCLNTHQ DGGGGGGNGL  420
IPAGMMGHLA RTASHGRSGE DVAGAGGGGG DGMTRDFLGL RAFSHRDILL AGFDSSCMGH  480
VNAAAGMAGY EPPPPHHGQP QHQHQQQQQQ QQGGSNEPWH GMGSHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	167	228	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-33	167	228	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	133	KLKQRGSKEAVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK289209	0.0	AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence.
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP003413	0.0	AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622202.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A0E0FND0	0.0	A0A0E0FND0_ORYNI; Uncharacterized protein
STRING	ONIVA01G22710.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	4e-90	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]