PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G22770.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 230aa MW: 26148.1 Da PI: 9.6025

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G22770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	70.2	4.3e-22	18	100	20	101
DUF260 20 pyfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++ + +++ ++ n+++lFG++n+ +++a+ +e+r+d+mss+ yeA+ +ar+P++Ga+gv+++l++++e++ a+l++l+++l ONIVA01G22770.1 18 RVILHgDEKVRLLNAQHLFGTRNIRCFVQATLPEKRDDLMSSIKYEAQLWARNPQSGATGVMWHLERKVERELAKLSKLRQKL 100 444332668999******************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.948	1	100	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-17	21	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MRHLQGAEDG VLAGVPARVI LHGDEKVRLL NAQHLFGTRN IRCFVQATLP EKRDDLMSSI 60 KYEAQLWARN PQSGATGVMW HLERKVEREL AKLSKLRQKL EMCKNLAAKK SILEAKGVGV 120 RQVTSKEQEQ ERQYQACPAR ISAWTLRLFV HRSACEIPIS QTESRIACMQ FFGRAFMAFV 180 GQIQEEAINH DAEDAHYDFF PLQAHLVLDS PRNPHPLGRP PLTRSHNVHG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP003413	0.0	AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0FND6	1e-171	A0A0E0FND6_ORYNI; Uncharacterized protein
STRING	ONIVA01G22770.1	1e-172	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19872	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	7e-09	LOB domain-containing protein 7