PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G25110.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 301aa    MW: 31284.8 Da    PI: 7.6357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G25110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-13134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  ONIVA01G25110.1 134 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 178
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.109.4E-4325IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.403127183IPR017930Myb domain
SuperFamilySSF466896.5E-17128184IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-17130182IPR006447Myb domain, plants
SMARTSM007178.5E-10131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-10131174IPR009057Homeodomain-like
PfamPF002491.5E-10134177IPR001005SANT/Myb domain
CDDcd001672.44E-9134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCSS SASAGHRDTT MLCDGGDGGG GSGLRLFGVQ VHVAAGGGGG  60
GGGGGLPMKK SYSMDCLQLA AAGAAPGSLV SPSSSSSSSM LLSIDEGGLE RASNGYLSDG  120
PHGRIVQERK KGVPWSEEEH RLFLVGLEKL GKGDWRGISR SYVTTRTPTQ VASHAQKFFL  180
RQSSIGKKKR RSSLFDMVPI CENGARVSEQ LSGEGAAAAA AASTSLSLMN THETSSDRVA  240
AIDLNSTEED DTVGTSGRPF FPVVLMEQQQ QASHGHGHHH HCTPLDLELG MSVSSTPSIG  300
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186190KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034320.0AK103432.1 Oryza sativa Japonica Group cDNA clone:J033128P13, full insert sequence.
GenBankCT8342880.0CT834288.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648805.10.0transcription factor KUA1
TrEMBLA0A0E0FP950.0A0A0E0FP95_ORYNI; Uncharacterized protein
STRINGONIVA01G25110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-46MYB_related family protein