PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G30330.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 254aa    MW: 28088.2 Da    PI: 10.4262
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G30330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP63.82.4e-20741381871
          E2F_TDP  18 eksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  ONIVA01G30330.1  74 KKVEAkGRTTYNEVADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 138
                      456666**************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013728.1E-2164138IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-2972143IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.11E-1574139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.6E-1574138IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144589.43E-25143240IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.2E-27145243No hitNo description
SMARTSM011381.0E-18145250IPR014889Transcription factor DP, C-terminal
PfamPF087811.2E-19146241IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPGLAN LLIREGAGLP SRPERGGGGG GGNAAEREEG GANRNGKKEK  60
AGAQRITGWG LLSKKVEAKG RTTYNEVADE IFAELKSITQ NGLEFDEKNI RRRVYDAFNV  120
LIAIRVIAKD KKEIKWMGLT NYRYEKIQKL EEVHKELITR IKNKKKLLQE IEKQNITLRN  180
QASQRPAESV NGILLPFLLI KTSRKARVEI EISEDSKFAR FDFNGAPFTM HDDVSILEAI  240
RRNNKGRAGL SIHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-19721391989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631692.11e-165transcription factor-like protein DPB isoform X2
TrEMBLA0A0E0FR660.0A0A0E0FR66_ORYNI; Uncharacterized protein
STRINGONIVA01G30330.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.22e-50Transcription factor DP