PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G33580.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 401aa    MW: 44655.1 Da    PI: 10.5543
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G33580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.73.3e-2120119199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      ffkvl     + ++rl +p +f++++        +g ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +fvvF++dg
  ONIVA01G33580.1  20 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKGLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDG 108
                      56666..3444.457********888******996666799*****************..*********************************9 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                      +++f  + +vf++
  ONIVA01G33580.1 109 NTRF--TAMVFDR 119
                      9999..6666665 PP
2B353.54.4e-17292378598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++ +v  s ++++p  f ++h   ++e ++++l+d+ g++W+v +i  ++++r  l++GW  F++ n L+egD +vF+l+   ef  +v++fr
  ONIVA01G33580.1 292 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIFR 378
                      6788999999*********9995..345679***************4.444455..9**********************9986666..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2115122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2116124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.01417120IPR003340B3 DNA binding domain
CDDcd100179.58E-1918118No hitNo description
SMARTSM010196.1E-1320120IPR003340B3 DNA binding domain
PfamPF023627.0E-1920118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-22280378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-23282378IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-25286378No hitNo description
SMARTSM010191.5E-12288380IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944288380IPR003340B3 DNA binding domain
PfamPF023625.6E-16290378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MPGAGGKKSP WASGERRPHF FKVLVGDFKQ RLKIPPNFCK HIPWEESRKA KGLKEASMAA  60
TLEGPSGRTW LVVIRRTAEG TFFTSGWPKF VQDQALRELE FVVFRYDGNT RFTAMVFDRT  120
ACEREDLMGG GGGDRPRKKR GRPRTAAASR DAARPKKDSV GKEMVTYRAS PSGGQPLQIV  180
DSSWTPEPGS TAVKNEEDAD ELPVCELPAS SASPPRHVPE GALDADGGAA RRGAAKTRSL  240
QDDLALASIP PSIRRYKGYV SRRRAVATAE RQRATEIAHA FRSPLPYCVI RMSTMHVYYS  300
FMMRFPTGFS RQHLPRERTD VVLRDPGGKV WSVLYIPNTR DRLSRGWCAF ARGNCLEEGD  360
YCVFELVAAA EFRVHIFRVV EPAVPAVRLR RVTVTCGRGP T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032290.0AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614236.10.0B3 domain-containing protein Os01g0723500
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A0E0FSH60.0A0A0E0FSH6_ORYNI; Uncharacterized protein
TrEMBLB8A9250.0B8A925_ORYSI; Uncharacterized protein
STRINGONIVA01G33580.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-21B3 family protein