PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G35960.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 205aa MW: 22421 Da PI: 9.3533

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G35960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.3e-38	101	156	4	59
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC s++tkfCy+nny+++qPr+fCkaC+ryWt+GGalrnvPvG+grrkn+ ONIVA01G35960.1 101 APLPCPRCRSRDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKNR 156 5689**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.751	103	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-31	103	156	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-26	103	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MAPAAGGFKL FGKVIMQCGV SEGTQDKAQG FVVAREKVEP EEEEEEEQRV PAAATSGQRA 60 SIKREAADRD EEQRQGGGDA AGQPTQRRLQ DSAEARAAAA APLPCPRCRS RDTKFCYFNN 120 YNVNQPRHFC KACHRYWTAG GALRNVPVGA GRRKNRPLGP LAVAHHHHHH RAAAGFVLGF 180 PNPSSPTSPS PVYTDRWPVT PDRPF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071083	0.0	AK071083.1 Oryza sativa Japonica Group cDNA clone:J023076F14, full insert sequence.
GenBank	AP003409	0.0	AP003409.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1131G08.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630447.1	1e-150	dof zinc finger protein 5
Swissprot	Q5JLR7	1e-151	DOF5_ORYSJ; Dof zinc finger protein 5
TrEMBL	A0A0E0FTE3	1e-149	A0A0E0FTE3_ORYNI; Uncharacterized protein
STRING	ONIVA01G35960.1	1e-150	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	3e-33	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]