PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G36110.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 590aa    MW: 63667.4 Da    PI: 9.4022
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G36110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR413.9e-13158196241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      +kk CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ +
  ONIVA01G36110.1 158 KKKCCNCKHSKCLKLYCECFASGVYCDG-CNCSNCFNNVK 196
                      799*************************.********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-14157197IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163424.555158283IPR005172CRC domain
PfamPF036381.6E-9159194IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAGKEQQGGG GPPPPPRAPV PAASSQPPIK KLVRQLDFTS AALAGNPAMA AAAAAVSRAL  60
QPRAVPVGFP QPQQLRAHLP VGVPQQLHPR GLPVMRSHHV VHVPLPRPAV AVAVPVPQVR  120
PAQPQPVPRP PVAVPLKPES PKPPRARLYE GKDGTPTKKK CCNCKHSKCL KLYCECFASG  180
VYCDGCNCSN CFNNVKNETA RREAIDATLE RNPDAFRPKI GSSPHANRNN MEAAGDLPLV  240
GKHNKGCHCK KSGCLKKYSN AAVNGAIGAA AFSSPSTSRK RKHIDPSLDH SAKENGAHRT  300
NHVPQKNGMP SDGPLPINQP VHPPTLGPFK VTYRPLLADI VQPGDVKELC KLLVVVSGNA  360
AKAYAGMTTF IHWELSHWET GKKSQEDKVV EKEDEMGGKR EGEIGGSLAS TNHDREENNK  420
DPNNQKASAD DPSTGGTRAG KASLEESKHD CNDDQKSNRP MSPGTLALMC DEQDTMFMTS  480
QNVVPQQPAP VNQNQSELYA EQERCVLTEF RDCLHKLVTF GRMKEEKFSM AIKSEVPAHP  540
MQANGVSRIP YSKEVDVPVV KTFLQSSSRH PAAGNSATGH LDKKPKHENT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-181592581199Protein lin-54 homolog
5fd3_B2e-181592581199Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221120.0AK122112.1 Oryza sativa Japonica Group cDNA clone:J033127O09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621699.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A0E0FTG60.0A0A0E0FTG6_ORYNI; Uncharacterized protein
STRINGORUFI01G34980.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-80Tesmin/TSO1-like CXC domain-containing protein